Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1814 |
Symbol | |
ID | 5612522 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 2186356 |
End bp | 2188437 |
Gene Length | 2082 bp |
Protein Length | 693 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640932690 |
Product | putative putative ferrichrome-iron receptor |
Protein accession | YP_001473553 |
Protein GI | 157374953 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG4773] Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid |
TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 38 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAGCGCAG CCTTAATGGC TTTCTCGGCG CTGGCCTCCT CATCAGTCTA TGCACACGAT CACCATGGTG AGATCGAAAT AATCTCAGTT ATGGGGACGA AACAGGCTCA ATCTACAAAT AGCTCGGCGA TGAAGATGGA CTTGAGTCAC CTTGAAACTC CTGGTTCCAT CTCTGTGTAT AACCAGGATC TTATCGAGGC GCAGGGTGCT GTGTCGCTGG GGGAGGTGCT GAAGAATGAC GCGAGTGTTT CAACGGGGAA TGTCAGGAGA GGGCGCGAGC GTTTCTACAT GCGCGGCTTC GTACTGGAGC CCGATCAGAG CTATCTGCGT GATGGTCAAT TTCACCTTTC GCGCTACTCG CAACCCATAG AGCTCTACGA GCGTATCGAA GTATTGAAGG GACCTTCGGC ACTGCTATAC GGCAAGTCGA CACCGGGCGG CATGATAAAT TTAGTGACAA AGCGGGCTCA GCAAGAGGAG TTTCACTTTA ATTTTCAGCA GGAATTTGGC TCGTTCGGCT ATAACAAGTC GCTGTTAGAT CTGGGGGGAG CCCTGAACGA GAGTGGCAGC GTCAGAGCCC GTTCAATTCT GTCCAGGTCG AGCGAAGATG GTTGGCGTGA GTATAAAGAT GGCAGCAAGG CGACTCAGGA GCGCTTTGTC GGTGCCTTGA TGCTGGAGGC TGATCTCAGT GACGATACGG TATTGAGTGT TAACTATGAT CGCACCGAAG ATGAGGGGGG GATAGACATG GGTCCCCAAC ATATCAAGAA CGAGAAAAGT GGTAAGTATG AACTCGCGGG AAAGCGAGAC TATATCTGGG ATATGCCATG GTCATTGCGT GACTCCAGCG TAGAAAATAT GGGGTTCACC CTCAACTCAT ATCTGAATGA TGATTGGACT ATCAGCGCTG GCTTTAATCG GCAGCGTCAT CAACGTCAGA CGACAGAGAG CCTATACGGC AAGGTCCAGG GTATCGATCT CGGCGTTGGT GAATATTCAC TGCGTGGCAG AGACACCTAT GAACAGTTCG ATGTGGTGAC CGGTTTCTTC GATTTTAAGG GTGAGTTCTA TACCGGTGAC GTTCACCACA GAATGCTCAT CGGCTCGAGT GTGGTCGATT ATCAAAAAAG TGGTATGCAG AAAAAGATGA AGATAGCCGA TAGGGTAAAC ATCAACGACG CAATCACTAT TGGCAAGCCA GAGGAGCTGG ATTATCGCAA TGGCACAGCG CTGAAACAGG TTCAGCGAAA AACCTACGGC GTTTACATTC AGGACCTTAT CGAATTCAAT GACAGCTGGC ACCTGTTGGC TGGTGTCAGG TTGGACAGAG AGGAGAGTAA GGAGGCGACG CATAACAACA TCTTACCTAA GCTTGCTGTC ATGTATCACC CGACACCAAA TACGACTCTG TATACTACCT ATAGCGAGAG TTTTGAGCCC AAAGATCCTG TCAGTAACAC GGAAGACACC AACTACGGTA AAAAATTGGA TGCCGAAAGA GGCGAGTCAT TTGAAGTTGG CGCTAAGGGG GAGTTTCTCG ATGGTTCGCT CTATGTCTCG ACGGCAGTGT TTGATATCGA AAAAAACAAT AAGGCGGTCA CCGATAAGAG TGGGGATAAC CCCATTACGA CTCAGAGCGG TAAGGTTCGC CATAAGGGGG TTGAGTTTTC CCTCGAAGGT CAGCTGAGTG ACAATTTGTC GGTGTTAACT TCCATGATGT ACCTCGACGG TAAGATCATC AGCGACCCAA TATATGCGGG AAAACGGTCG AAAGACACCC CTCAATTCAG TGCCTGCACC TGGTTTAATT ATCGTGTGGG TGATAAGAGT CAACTCTCTG TCGGAGCCAT ATATGTAGGT GAACGCTTCG GCGATACCCC CAATTACTTC AAGAAAGATG CCTACGTTAA AGTCGATATG GGCTTTAGCC ACACCATCAA GTTCGCCAAT GAGCAGCAGG GCATTATCTC AATCAATATC GATAATCTGT TCGATGAAGA TTATCTGCGA GGTGGCTGTA ATAACAGCGC GATGTTCGGC TCACCGAGAT CAGTAAAGGT CTCTTTTCAG TATAAGTTTT AG
|
Protein sequence | MSAALMAFSA LASSSVYAHD HHGEIEIISV MGTKQAQSTN SSAMKMDLSH LETPGSISVY NQDLIEAQGA VSLGEVLKND ASVSTGNVRR GRERFYMRGF VLEPDQSYLR DGQFHLSRYS QPIELYERIE VLKGPSALLY GKSTPGGMIN LVTKRAQQEE FHFNFQQEFG SFGYNKSLLD LGGALNESGS VRARSILSRS SEDGWREYKD GSKATQERFV GALMLEADLS DDTVLSVNYD RTEDEGGIDM GPQHIKNEKS GKYELAGKRD YIWDMPWSLR DSSVENMGFT LNSYLNDDWT ISAGFNRQRH QRQTTESLYG KVQGIDLGVG EYSLRGRDTY EQFDVVTGFF DFKGEFYTGD VHHRMLIGSS VVDYQKSGMQ KKMKIADRVN INDAITIGKP EELDYRNGTA LKQVQRKTYG VYIQDLIEFN DSWHLLAGVR LDREESKEAT HNNILPKLAV MYHPTPNTTL YTTYSESFEP KDPVSNTEDT NYGKKLDAER GESFEVGAKG EFLDGSLYVS TAVFDIEKNN KAVTDKSGDN PITTQSGKVR HKGVEFSLEG QLSDNLSVLT SMMYLDGKII SDPIYAGKRS KDTPQFSACT WFNYRVGDKS QLSVGAIYVG ERFGDTPNYF KKDAYVKVDM GFSHTIKFAN EQQGIISINI DNLFDEDYLR GGCNNSAMFG SPRSVKVSFQ YKF
|
| |