Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1805 |
Symbol | |
ID | 5612715 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 2174053 |
End bp | 2176230 |
Gene Length | 2178 bp |
Protein Length | 725 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640932680 |
Product | diguanylate cyclase |
Protein accession | YP_001473544 |
Protein GI | 157374944 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 44 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTCAAAA TCAATCGACA ACATATACAG ATATCTCTGG TACTAGGCTG CTTGGGTCTA TTGACGAACC TATACCCTAT CCCTCTCTTC GGTAATGTTC AGCTTATCTT AGGGAATATT GTCATCGTTA TTTCGGCAAT TCTGCTGGGG CCTTGGTTCG CCCTGCTCAC GGCCGTACTT TGCGCAACCG GTCTTTTTAT CGCTTGGGGT AGCTGGCATG TATTCATATT ATTCGGTCTG GAAGCCATCT GGCTGGGCTA CGCCCGCAGA AAAGACATTT ATGCTCTTTA TGCCGACATT GGTTATTGGC TGGTCATCGG TATGCCACTC TTTTACCTAT ATATCCTGCT GTTTTCAAAG CAACCCGAGA GTCACATATC ATTTATTACG CTTAAACAAG GGGTAAATGG TTTAATCTAC GCGGCACTTG GCTCACTCAT TGTCACCCTG TTTTCTTCAC TTTGGCATTT AGAAGGCAAA GTAAAAGATC AAAAACGCAG AACCTTTAAT GCACAGCTCA CCTATAGCTT CACCTTAGTG CTCACCATAT CTCTGCTAGC CTCGACATTA ATATTTAATC ACCAGGTAAT AGAAAAGCAG CAAGTTAGAC TTCAACAAAG CTTACAGGAC TCTGCAGCGC ATTTAGGACT GGCCACAGAA GTATTTATCG ATACTCATAA GAAAGCCATA GACAATGCAT CAAGATGGCT CAGCCTGTCT CAAGCCGATT TTCATCGCTG GCAGAATAGG CTCGCTAAGC TTCACCAAAG CTATCCCGGC TTCATCACTA TGTTAGTCAC TGACGCCGAT GCAAGGATCA TAGCGGCAAG CCCACTCTCA CGCCTTAAAC CCGATGACGG AAAACTTGAG AATTTAAGTG TTAAAGACAG ACACTATTTT CAGGAGGCTT TTTTCAACCA GATAACCTAT GTCTCCCCGG TTTTTTTAGG AAGAGGATTT GGCAACGATC CCATCGTTGC GGTCAGTGCC CCAATCTATC AGAGTGAAAA TGCTGACCAG CCCGTGGGCG TTATCGAAGG CTCATTGAAC CTGAAAAAAT TTGTGGATAT CGATAGAGTA AGTACGCTTC ACCACCACCA GCAATCAATG ATAATCATCG ACGAGAATAG CCGGGTGATC TATGCATCTG AGGAACTCGA GATCCCTCCA CTATCCCAAT TCACCAGGAC TGAAAGTGGC AAGAGGTATA AGACCAATTT AGATATGCTC AACCTCCATG ATATCGAGAA CCCTAACCCT GAGTTCGTCT ATGCCACCTA CACACTCAAC AATGGATGGC AGCTATATGT TGTTAAACCT TTCTCACCAC TGTTGAAGAC ACTCGAGACT CAATACCTCA CCACTTTTGC AATCCTGATC CTTTCACTTA TCATCACTAT CATACTGACC CGAGTGATCA GCCAAAGGTT AACCACCCCT TTGAGTGTTC TGGCAAATAA GTTTGCAGAA AAGGGGTATC AAGATGCGAG CGATTATAGT ATCGATCAGG AATCTCCCCG TGAATTTCTG ACCCTCTTTC AAAGCCTGCG TCAGAGTAAA CAGCAACTGA TAAGTCATCA GTTAGAGCTC GAAGAGAAAG TGGCGATACG CACTTTCGAG CTTGAGAAGG TGAATAAGAA GCTTCAATCT CTCGCCGAAA GAGATGAATT AACCGGGCTG TATAATCGCC GCTATGCCGA AGAAAAATTC CGGGCTACAC AGGAGTTTTG TCACCGAATT GATGAAGCCA TGGCGTTAGC GATACTCGAT ATCGACAACT TTAAAGATAT CAATGACACC TATGGGCACC AAGGTGGTGA TGAATGCTTA CGTGTTATTG CCAGTAAGAT GAAGCGTTTT TTCAAACGGG ATACCGATGT CATAGCCAGG TATGGCGGGG AGGAGTTTCT GCTCATCCTG CCTCTATGCA ATGTCCTCAT GATTGAAGAG CACCTCAATG AGTTCAGGCG TACGATCCGT CAATTACAGA TTGATAACCC GCAGGGTAAT ACCAGCATGG CCGTGACGGT CAGCATCGGC GCAATCGTTT CCAATGCAAG TTATAGTGAT GCATTAGAAA CCTGGTTTAA GGAGGCAGAT CTGAATCTGT ATAAGGCCAA GAACCAAGGA AGAGACCGTG TCATCGTCTC TATCCCCGAG CCCCAACGCC CAGGGTAA
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Protein sequence | MFKINRQHIQ ISLVLGCLGL LTNLYPIPLF GNVQLILGNI VIVISAILLG PWFALLTAVL CATGLFIAWG SWHVFILFGL EAIWLGYARR KDIYALYADI GYWLVIGMPL FYLYILLFSK QPESHISFIT LKQGVNGLIY AALGSLIVTL FSSLWHLEGK VKDQKRRTFN AQLTYSFTLV LTISLLASTL IFNHQVIEKQ QVRLQQSLQD SAAHLGLATE VFIDTHKKAI DNASRWLSLS QADFHRWQNR LAKLHQSYPG FITMLVTDAD ARIIAASPLS RLKPDDGKLE NLSVKDRHYF QEAFFNQITY VSPVFLGRGF GNDPIVAVSA PIYQSENADQ PVGVIEGSLN LKKFVDIDRV STLHHHQQSM IIIDENSRVI YASEELEIPP LSQFTRTESG KRYKTNLDML NLHDIENPNP EFVYATYTLN NGWQLYVVKP FSPLLKTLET QYLTTFAILI LSLIITIILT RVISQRLTTP LSVLANKFAE KGYQDASDYS IDQESPREFL TLFQSLRQSK QQLISHQLEL EEKVAIRTFE LEKVNKKLQS LAERDELTGL YNRRYAEEKF RATQEFCHRI DEAMALAILD IDNFKDINDT YGHQGGDECL RVIASKMKRF FKRDTDVIAR YGGEEFLLIL PLCNVLMIEE HLNEFRRTIR QLQIDNPQGN TSMAVTVSIG AIVSNASYSD ALETWFKEAD LNLYKAKNQG RDRVIVSIPE PQRPG
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