Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1752 |
Symbol | |
ID | 5610765 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 2105027 |
End bp | 2105713 |
Gene Length | 687 bp |
Protein Length | 228 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640932622 |
Product | exonuclease, RNase T and DNA polymerase III |
Protein accession | YP_001473491 |
Protein GI | 157374891 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0847] DNA polymerase III, epsilon subunit and related 3'-5' exonucleases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.974863 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.0312157 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGTGATGG GTTTCGCTTT ACGCTCACAA CTGTGCTGGA GAGCTTTTTT GAGCCGTTCG GACTCGACTA AACAGTATTA TCGCTCTCAA ATGCCCGCGG TTGGTCAGGT CTTTTCTGAG TCATCTTTGA TGGCTGTCGA TCTTGAAATG ACTGGCTTAG ACCCTAACAG CGATCAGATA CTGAGCATCG GCTTAATTCC TATAGAGAAA GGCCTGTTGC AACTTAGTCG CGCCGAACAG AAGTTGATTC AGATAAACGG CAGTGTCGGC CAGAGTGCAA CCATTCACGG TATCGTCGAT CATCAGCTAC AAGCGGGTGT CTCTATCGAT TCGGCTATTG AATGGTTCCT GGATCGTACC AGAGGAAAAT TGTTGGTTGC CCATCACTCT CCATTGGATC TAGGTTTCTT ACAGGTGGCA ATTAAACAGG TCACGGGAGA GTCGATAAAG TTGCTGGCTA TCGATACCTT GGCCCTTGAA CGTAAACGTC TGCTTCGCAA ACAAGATGTA TTGAAAGAGG GGACGCTAAG GTTGGGGGCA TGCAGGGCGC GATATGGTTT ACCCGTTTAT GCTGCTCACA ACGCTTTGGT CGATGCCTTA GCCTGTGGTG AACTCCTGCT TGCTCAGGTT GCAGCTTTAG GAGATTTGCA CCAGGTGACA GTCGCTGAAC TGTGTCAGCT ATCCTGA
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Protein sequence | MVMGFALRSQ LCWRAFLSRS DSTKQYYRSQ MPAVGQVFSE SSLMAVDLEM TGLDPNSDQI LSIGLIPIEK GLLQLSRAEQ KLIQINGSVG QSATIHGIVD HQLQAGVSID SAIEWFLDRT RGKLLVAHHS PLDLGFLQVA IKQVTGESIK LLAIDTLALE RKRLLRKQDV LKEGTLRLGA CRARYGLPVY AAHNALVDAL ACGELLLAQV AALGDLHQVT VAELCQLS
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