| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1729 |
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| Symbol | |
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| ID | 5610108 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2075216 |
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| End bp | 2076634 |
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| Gene Length | 1419 bp |
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| Protein Length | 472 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640932599 |
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| Product | tetrachloroethene dehalogenase |
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| Protein accession | YP_001473468 |
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| Protein GI | 157374868 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1600] Uncharacterized Fe-S protein |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence
[TIGR02486] reductive dehalogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.000000209595 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGCGAAC AAGAGAAACA AGCCGTCGAC GAGAGTCGGC GTCAGCTATT AAAAATCGGT
GCAGGCACCA TAGCCGGTGT CGGCGTCGTG GCAGGAGCAG GAACTTGGAT AAAACAAAAA
GTTGAAGGTG TCGAGCAAGA TGGCTATCCA GTTGAAATTT CGCCTGAATT AAAACCCAAA
GATCAGCGCG ATGTGCTGCT TACCTTTGCC TGCAGTCCGG CATTGGCCGC AAAGCATCCA
GAGCGTAACC TGAGTTTTAG TTTGGATAGT GAGGGTCCGA TTAAGCCGGG CGAAAAAGCG
TTTAATTTCC AGCAGCACTG TCAGAATTTC CTTACTGCAC CCGAGCGAGC CGATAATACC
AAGGTTGGCT ATACCCAACT GGATTATGCC CTCGAAGAAG CATGCTGGGA AGGTATGAAC
CGGATGGCGC CGATGCAGGC ATTCGGTTTC CCCAATCAAG GGATGTTCGG CTGGGATCAG
TCCGATGTCG TAGATCATAA GTACCCGTTT GAAGATTCGG TAGAGATGAT CAGCGCGATT
AAGACAGCGG CCAAAACATT CGGCGCCGTC AGAGTGGGTA TTTGCCGGCC TGACAAGCGT
TGGAACTATG ACCCTCTCTA TGATGCCATT CAAGAAAAAA CCCTTAGCTG GGAAGAGGAT
TTTCCGTTCG AGCCTAAATC GGTCATCGTG ATGCTAACCG ATATGGACTA TGAGGCAATG
GCTTGTGCTC CGATGATCCC GGCATCAGCT ACTGCGGCCA TGGGTTATAG CCATAATACC
TTGCAGGCCG GCGCTATGGC TAAGTTCCTG CGAAGGCTTG GTTACCCGGC CGTCGGTTCC
GGTAATGACT TAGGGAACTC GGTTGCCTAT GCAATTTCCG CCGGACTCGG TGAGGGAGCG
CGTAATGGTC AGATAATTGC GCCTGGCCTA GGCCCAAGAG TGCGTATTTC CAAGGTTTAT
ACCAATCTTG AGCTCGATGA CGCCGCCTAT GACAAGCCGC GGGACTTCGG CATCTTGTCA
TTCTGTGAAA ATTGCAAGCG TTGCGCCGAG TCATGTCCGG GCAAGGCTAT CAGCATGGAT
GATAAACCTT CTATGGGATC CACACTCCCA GGACATGATG ACCCGGATTA CAACTGGCAG
GGCCAGCCAG GCATACGCAA ATTTCATAAC GATGCCAAGA AATGTTTCAA GTTCTGGTCT
GATAACGGCG GTGATTGCGG TGCCTGTATT AGCTCCTGTC CCTGGAACAA GCCTGACTTC
TGGCATCACA GACTGATCGA CGGTTCCAAC ACCTTCACCG GCGGCGCCGT GCATAGCATG
ATGAAGCAAG CCGATATCCT GTTTGGCTAT GGCAATGTCA ACGATGAGAA GGCGGTCAAG
AAATTCTGGC GTAGTGGTTT TAGCGGTGAT TTCACCTAA
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| Protein sequence | MSEQEKQAVD ESRRQLLKIG AGTIAGVGVV AGAGTWIKQK VEGVEQDGYP VEISPELKPK
DQRDVLLTFA CSPALAAKHP ERNLSFSLDS EGPIKPGEKA FNFQQHCQNF LTAPERADNT
KVGYTQLDYA LEEACWEGMN RMAPMQAFGF PNQGMFGWDQ SDVVDHKYPF EDSVEMISAI
KTAAKTFGAV RVGICRPDKR WNYDPLYDAI QEKTLSWEED FPFEPKSVIV MLTDMDYEAM
ACAPMIPASA TAAMGYSHNT LQAGAMAKFL RRLGYPAVGS GNDLGNSVAY AISAGLGEGA
RNGQIIAPGL GPRVRISKVY TNLELDDAAY DKPRDFGILS FCENCKRCAE SCPGKAISMD
DKPSMGSTLP GHDDPDYNWQ GQPGIRKFHN DAKKCFKFWS DNGGDCGACI SSCPWNKPDF
WHHRLIDGSN TFTGGAVHSM MKQADILFGY GNVNDEKAVK KFWRSGFSGD FT
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