| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1667 |
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| Symbol | |
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| ID | 5612134 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1997705 |
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| End bp | 1999426 |
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| Gene Length | 1722 bp |
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| Protein Length | 573 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640932537 |
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| Product | long-chain-fatty-acid--CoA ligase |
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| Protein accession | YP_001473406 |
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| Protein GI | 157374806 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAGCAT CTTTTTGGGA TGGTAAACGC GCTTCAGGAA TTAAAGATAA AATTAATTTC
AATGAATACA GCTCGGCAGT TCAGGCCATC GAGGAAGCAT TTGTTAAATA TGCTGACAGA
CCCGCATTTA CCAGCTTAGG CCATACATTA AGCTTCCAAG AGATTGACGC ATACAGCGCC
GCGTTTGCTC ATTACCTGCA AAATCATACT TCACTACTTC CGGGCGATGC CATCGCCATT
CAGATGCTCA ACACCTTGCA ATACCCTATT GCCGTATACG GTGCGCTCAG AGCCGGCCTT
AGAATCGTCA ATACCAACCC CCTATATACT GAGCGGGAGA TGATCCACCA GTTTAACGAC
TCCGGGGCAA AAGCCCTGCT CTGTATGGAT ATTTTTGCCA AGTCTGTAGA GAATATTCAG
GAACAGACGG ATCTGGAGCT GGTCATGGTT GCCAGCCTCG CCGATATGCT ACCCAGCGTG
AAACGCGTGC TAATCAACTC CACCGTCAAA CATATCAAGA AGATGGTACC CAAATATCAT
CTGCCTGAAG CCATCTCATT TAGAAAAGCT CTGAAACTGT GTAAGGGTAA AAGCTTTACG
CCCGCTCACC TTCCAAACCC AGATGACACC ATCGTTTTGC AATATACCGG CGGTACCACT
GGGGTGGCAA AGAGCGCCGA GCTCACCAAT GCCAACATCA TCGCCAACAT GCTTCAGGCA
GGCTCCGTAG TCGCGCAGAC CGATGAGCAA GGTAATCCTC TTATAGAAGA TAACAAACAG
TCGATCATGG TCGCCCCCCT GCCGCTCTAC CATATCTACT CGTTTACCGT ACACATGATG
GCGTTCTTCA GGTTAGGTGA ACACAGTGTT CTGATAGCTA ACCCCAGAGA CACAGAGACC
TTTATCAAGG CGATGAAGCC ATTTAAGATC ACCGGCCTCA TGGGGCTCAA TACACTGTTT
GTCTCCCTGA TGGAGAGTCC TAGCTTTAAA GAGCTGGATT TCAGTGAGTT GATTTTTACC
CTATCGGGCG GAACGGCACT GATCGACGAC ACAGCCAATA GATGGAAAGA AATAACCGGG
GTCGGCATCT CAGAGGCCTA TGGATTGACC GAGTGTTCTC CTGCGGTATG TATGAACCCG
ATTAATGGTC TGGAGCGACA GGGGACAGTT GGTCAGGCCC TGCAGGGAAC AGCACTAAAA
TGCATCAATG CCATCGGCGA AGAGGTGCCT ATCGGTCAAC GCGGTGAGCT GTGTATTAAG
GGGCCTCAGG TGATGAAGGG CTACTGGAAT CGCCCCAAGG CGACGAGAGA ATCATTCACG
GAAGATGGTA AATGGCTACT CACCGGAGAT ATTGCCATCA TAGATGATGA CGGCTATGTC
AGTATTGTCG ATCGCGTGAA AGATATGATC ATCGTCTCCG GATTTAATGT CTTTCCAAAT
GAAATTGAGG CAGTTGTGGC CACCCACCCG GATGTTATCA ATTGTGCGGC GATAGGAGTG
CCGGATCCTA AACGTGGAGA AGTCGTCAAA CTCTATGTTG TAACGAACAA TAACACCAGC
CTCAACGGCG ATGAGATCAA GGCCTTCTGC CAAGATAAGC TTACGGCCTA TAAGATCCCA
CGCCTTTATG AGTTCAGAGC TGAACTGCCT ATGTCTCCCG TAGGCAAGAT ATTACGCAGA
AAACTAAAAG ATGAGACCGA ACCCGTTAAA ATGTCAGCCT GA
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| Protein sequence | MEASFWDGKR ASGIKDKINF NEYSSAVQAI EEAFVKYADR PAFTSLGHTL SFQEIDAYSA
AFAHYLQNHT SLLPGDAIAI QMLNTLQYPI AVYGALRAGL RIVNTNPLYT EREMIHQFND
SGAKALLCMD IFAKSVENIQ EQTDLELVMV ASLADMLPSV KRVLINSTVK HIKKMVPKYH
LPEAISFRKA LKLCKGKSFT PAHLPNPDDT IVLQYTGGTT GVAKSAELTN ANIIANMLQA
GSVVAQTDEQ GNPLIEDNKQ SIMVAPLPLY HIYSFTVHMM AFFRLGEHSV LIANPRDTET
FIKAMKPFKI TGLMGLNTLF VSLMESPSFK ELDFSELIFT LSGGTALIDD TANRWKEITG
VGISEAYGLT ECSPAVCMNP INGLERQGTV GQALQGTALK CINAIGEEVP IGQRGELCIK
GPQVMKGYWN RPKATRESFT EDGKWLLTGD IAIIDDDGYV SIVDRVKDMI IVSGFNVFPN
EIEAVVATHP DVINCAAIGV PDPKRGEVVK LYVVTNNNTS LNGDEIKAFC QDKLTAYKIP
RLYEFRAELP MSPVGKILRR KLKDETEPVK MSA
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