| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1666 |
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| Symbol | |
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| ID | 5610386 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1996593 |
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| End bp | 1997675 |
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| Gene Length | 1083 bp |
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| Protein Length | 360 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640932536 |
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| Product | helix-turn-helix-domain-containing protein |
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| Protein accession | YP_001473405 |
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| Protein GI | 157374805 |
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| COG category | [K] Transcription |
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| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATTAG GTGATATTTC TGTTTCATAT ATCGAGATTG TGATTAAGGC AATGAAGCAC
CTGGATATCG ATGTCGATGA TATTTTAGCT AAATATTCCA TCAATCAGGC GGCTCTCTCT
TCACCCGATG CAAGAGTAAC CATTCCAAAA TTTATGCGCA TAGGTCATGA CTGCATTACA
AAAAGTGGTG CCCCCTGGCT TGGGTTGGTG ATGGGGGAGG TGACTACGCC GACGAACTTA
GGTATTGCAG GCCTGCTGGC ACTGTCGGCG CAAAACCTGA AGCAAGCTTG TGAACAAATT
AGCACCTATG AGTTGCTGAA CAAGTATAAC TCCAGAGGAC AATCCCGGTT CTACGTGAGT
CACTCTTTCG GTATGGAGCA GGGGAAGAGT CGGGAGTTGT GTCGCGATTA CGGCATCGAA
GATGGCCAGG GCGTGTTAAT GTTTTACTCG ATCAATCCCT ATAATGAATA CAATCATTTC
GTCGTCGACT CGGTACTATC CGGTTGGCAT AGGGTCATTA AAGCATTAAC CGGTCGGGAA
GATGCGGTTG CTAAGGTCTG TTTTGAATTC CCGGCCCCGG CCTATGCGGA TAAATATAGC
GAGTACTTCA ATTGCGAAGT CCTGTTCGAA CAGGCTGATA ATTACCTGGT ATTAAATGCT
GAGGCGCTGA ATTGGCCCTG CCAGTATCGC AGTGGACCGA CATTTGAGTT GTTAAGACGA
GGAGCAGATG AAAATCTTGA GAAGGCTCGA TTAGGCTTGA GTTTTAATGA AAAGGTCAGT
CGTGCCATCG GGCCCTTGCT TGACGGAACT ACACCGACTC TGGAGCAGGT CTCCGAGCAG
CTGAATATGG CGCCATGGAC GGTCAGGCGC AAGCTGGTCG ATGAGGGGGG GAGTTTTCAA
AAGACACTCA ATGAGACCCG TCGTGATCTG TCAATCTCCT ATGTGCGAGA TACTGCGCTG
ACACTCGGGG AGATCGCCTA CCTGTTGGGG TTTGGCTCAC CCACGGCATT TCAGCGTGCA
TTTAAACGTT GGACCGGAGA AGCGCCGGGA AGATTCAGAT TAAAGCAGGC TTCAAACGAA
TAA
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| Protein sequence | MKLGDISVSY IEIVIKAMKH LDIDVDDILA KYSINQAALS SPDARVTIPK FMRIGHDCIT
KSGAPWLGLV MGEVTTPTNL GIAGLLALSA QNLKQACEQI STYELLNKYN SRGQSRFYVS
HSFGMEQGKS RELCRDYGIE DGQGVLMFYS INPYNEYNHF VVDSVLSGWH RVIKALTGRE
DAVAKVCFEF PAPAYADKYS EYFNCEVLFE QADNYLVLNA EALNWPCQYR SGPTFELLRR
GADENLEKAR LGLSFNEKVS RAIGPLLDGT TPTLEQVSEQ LNMAPWTVRR KLVDEGGSFQ
KTLNETRRDL SISYVRDTAL TLGEIAYLLG FGSPTAFQRA FKRWTGEAPG RFRLKQASNE
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