| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1622 |
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| Symbol | |
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| ID | 5611384 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1935287 |
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| End bp | 1936921 |
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| Gene Length | 1635 bp |
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| Protein Length | 544 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640932492 |
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| Product | hypothetical protein |
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| Protein accession | YP_001473361 |
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| Protein GI | 157374761 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.652102 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00000525013 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGGTAATAC GACAACTCTT TATTGCGGCA CTATTAACTC TGTCGTTCTC ATTCCCAAGC
TTTGCCATCA GCAAAATTGA AACCTCTGTG GATAGAAATC CTGCAGTGGA AGGTGAGTAC
CTGGTTCTAA CCATAAATGC CGACGACGAC ATCAGCACAG GAAAGCTCGA TACCTCTTCG
TTACTCCATG ATTTTATCGT GGGCAGAACC AGTGTGAGCC GCAGTACGCA GATCGTCAAT
TTTGACACCC AAAGACTCAC TCGCTGGCAA GTACTATTAG CCCCAAAGCG TTCCGGTAAC
ATTCTCATTC CGCCCTTCAC TATCGACGGA GTGAGCTCTG CGCCAATTAG TTTAACCGTT
GTCCCCGTAG GCAGCCAAAC CGAGCAGATG CAAAGCCTCT TTATTCGAAC CAGTTTATCG
ACCGAGGAAG CCTATGTCGG CCAGCTGATC ACCTATAAGG TTAAGCTCTT TCTGGCGGTC
GAACTGCAGC GCGGAATACT GAGCGCACCA GCGATAGATG GCGCACAGAT TAAGCAACTT
GGCGAAGATA TCGATACCAC AGAGATCGTC AATGGACGGC GCTACAGAGT CATAGAGAGA
ACCTATGGCA TTATCGCCGA CCTACCCGGT GAATTAACCA TTGAGGGGGC TCATTTCTCA
GGTGACGTTG TCGTTCAAGC ATCGAGACGA GGCGGTATGT TTTCTTTCAA TGAAAGTAAA
CCGATGCAAG CCAAAGCCAC TAAATCAGTT ATTTTGATCA ACCCGATCCC AACTGAGTTT
ATTGGTGACT GGTTAGTCTC AGATCTTGTC GCATTGAACG AAGAGTGGAA ACAAGAAGAC
AGCTACGAGC TCGGCTCTCC AATCACGCGT ACCATTACGC TTCTAGCGGT GAATACCGAC
GAAACAAGCC TGCCAGAACT CGATATTAAG GTACCAGGCG AACTAAAAAC CTATCCGGAA
AAGGCTCAAA GACAGTCTTT TGTACGCGAT AAAAAGATCG TCTCTCAACT GACACAGACC
TTAGCCATCG TCCCGACTAA GGCCGGCAAT TACACACTGC CAGAGATTAG TGTTCCATGG
TGGAACCCGC ATACGAAAAA ACAAGAGGTC GCTAAACTTC CTGCAAGAAC CATCCTTATC
ACTGGAAGTG ATAATGTCGA AAATGAGTTA CCTATCATCT CAGCCGAAAC GCATGGTTCG
ACGACCTCCG GTATCTGGCC CTGGTTAACA CTGTTTTTTG CGCTACTTTG GTTAGTGACA
CTGATGCTCT GGCGCCGGGC ACTTTCCCAT AAATCACGTG CCGGTAATGA GCGTTTACAA
GTTGCAGCAG TACAACCTAA GCAATCGAGT AGCTATGAGA GTATCGAGCA GGCCTGTGAA
GAGGAGAATG CGGGTAAAGT ACTCTCCGCT CTTCAAGCCT ATTTCAGCGA GCAATATGCC
CAAACCATGA CCTTAAATGA GATATCTCAC TTATCCACCG CGCTGCATAC TGTGATTGCA
GAGCTACAAG CAAGCGCTTT TAGCCAGGAA AAACCTAAAA TAGATTATCG AACAGTCTTA
GCCTCGGTAA AGTCGGCCCC CGCAGTATCG ACTAAACAGG AAAAATCGGC TTTGGTCGAA
CTCAATCCCC GATAA
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| Protein sequence | MVIRQLFIAA LLTLSFSFPS FAISKIETSV DRNPAVEGEY LVLTINADDD ISTGKLDTSS
LLHDFIVGRT SVSRSTQIVN FDTQRLTRWQ VLLAPKRSGN ILIPPFTIDG VSSAPISLTV
VPVGSQTEQM QSLFIRTSLS TEEAYVGQLI TYKVKLFLAV ELQRGILSAP AIDGAQIKQL
GEDIDTTEIV NGRRYRVIER TYGIIADLPG ELTIEGAHFS GDVVVQASRR GGMFSFNESK
PMQAKATKSV ILINPIPTEF IGDWLVSDLV ALNEEWKQED SYELGSPITR TITLLAVNTD
ETSLPELDIK VPGELKTYPE KAQRQSFVRD KKIVSQLTQT LAIVPTKAGN YTLPEISVPW
WNPHTKKQEV AKLPARTILI TGSDNVENEL PIISAETHGS TTSGIWPWLT LFFALLWLVT
LMLWRRALSH KSRAGNERLQ VAAVQPKQSS SYESIEQACE EENAGKVLSA LQAYFSEQYA
QTMTLNEISH LSTALHTVIA ELQASAFSQE KPKIDYRTVL ASVKSAPAVS TKQEKSALVE
LNPR
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