| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1583 |
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| Symbol | |
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| ID | 5612358 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1887329 |
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| End bp | 1889299 |
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| Gene Length | 1971 bp |
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| Protein Length | 656 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640932453 |
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| Product | hypothetical protein |
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| Protein accession | YP_001473322 |
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| Protein GI | 157374722 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair
[R] General function prediction only
[T] Signal transduction mechanisms |
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| COG ID | [COG0515] Serine/threonine protein kinase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00309667 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.612487 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAAAAC AGATAAGCTT CGGGACTCCG GTGAATGACG CCGAACGTTG GGCATTTTCA
TTGTTAGCCT CCGAGCTGCC GGAAAATTAT ATATTGCTGA CTAACGTGGA GATCCCGACA
AAATCGGGTC AGGCGATGGA GGTCGATGCG CTCGTTATAG GCGAGTGGGG AGTCTATGTT
GTCGATGTTA AGGGCTATAT CGGCAGGCTG GATGCGGGCC TGCATGCCTG GTCACTCGAT
GGCCGAGAGG TCGATAACAG CTTGGCAAAA GCTAACTATG TCGCCCGGGT TCTGGCGGGT
AACGTCAAGC ATAAGATCCC CGTCGGTGTC TACGCGCCCT GGTGTCAAGG CATGGTGTTT
ATTACCGGCC GCAAAGGCGA AGAGATAGAG CTTGAAAAAC AGCAGGGCTC ACTCAGCATC
TATACGCCAA AGCAGATTGT CGCTGCGTTA ACCAAGGAGT GGGGACTCAC TGCACCTCGT
AGCCATCAGG TCACCGACGA GCAGAAGGAG ATGGTGCTCA AAACCATAGG CCAGGTTGCC
CTGGTCGAGC AGCGAAACAA TAAAATTCAG GACTTTACTA AGCTCAAATG CCTCTTCATT
CAGAGTGGAC TGGAAGTGTG GCAGGCGGAA TACAACCCGG GAGACTGGAC CGCTCCATGG
TTACTTAAGA TCTTGATCCC AACTCAGTTT ACCGACCAGA TCCAGTCACA AAATCATGAG
ACTCAACTGA GAGCCGAATT TAAACGACTG CAGGCCCTGA CCGGTTGCAG TGGTGTGCCT
TATTGCGCTC CGCTCATTCA GGACGGAGAG CAGTTAGTAC TTCCTATCCG TATGCCACGC
GGTGTACCGC TGAATGTATT GGAAACAGAG AGCCTCACAA CCTATCAGCT GTTGGAGATC
TTAAGGCGCT CGGTATCCGG GTTACAGCAA ATTCATCGTC GTGGCTTTAC CGTCGGCGGC
TGGACCAGTA ATTGTGTCTT CGTATCAGAT ATGGGGGATG TCGAATTCAT CGATATTAAG
GATACCCTCA ATACCGGTGA AGACATTCAG GCTTATGCCC AAGGCTTCTT AGCCTTAGCC
GAGCAGACGA ATCAGCCACG TATCTATCAG TGGTATCAGG TGGCGGCAAA AGGGGGAGGC
GGCGATCTCG ATGCACTTCG CTGCGATCTG TCTGCGCTTA TCGATAACGG TGTGTGTGAT
ACCCTGCCGG AAAAACTGGA GATAACCGTC GGAGCGATTG TCGACCATCA TTATCGACTC
GAGCAGTTTA TTGCTGCGAC CCGGCACAGC CAATTCTGGC GTGCAAGGCA TATACAGGGC
CACTATCAAT GCGGCATCTC GGTATACAGC AAGGTCGAGT CAAACTGGCC GACACTGAGT
AACCTCTATC GCAGCTTATC CAAATTGCAT CATCCTCATG TCGAAAATGT CCTGGCCTTT
GGTCAACTCC CACAAAGTGA AGAGCTGTTT ATTGCGCGCT CTTGGGAATA TGGCGTCTCT
CTCGATGAGC TCAGCGATAT TCAGCTGGGG CAGCCGGTTA TGTGGTTTAC TCAGTTACTA
ACCGGTCTGC AATATATGCA TCAGATGGAT ATCTATCACG GTGCAATTTG TCCCAAAAAT
ATTATCTGTA ATCAAGAGAA AGCCATCTTA GTTAACTTCG GCATCGGATT GGATATTGCG
ACCAGTCACT ATGCCAGCCG CTACGCCGAT CCTAAGTTGT GGGCGGCAGA GGGGGATGCG
GAGAAGGATC TCTATGGTCT GGTTGCCAGC TTTATCTCGA CACTGGCACC GGTTTCGCTT
CAGGGGGACG GCGGCCAAGA GGGGATTATT CAGGCGCTTA ACTCATTCGA TAAGCAGTGG
TTTGGTGAAA AGACCTTCGA TACCTGTATG AAGGTATTAA ACTTTGAATT TGATGTTTCT
CAAGGCACTA ATTACCAGGA AGCGTTCGAT GTCGTCGAGT GTTTAGTTTA A
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| Protein sequence | MAKQISFGTP VNDAERWAFS LLASELPENY ILLTNVEIPT KSGQAMEVDA LVIGEWGVYV
VDVKGYIGRL DAGLHAWSLD GREVDNSLAK ANYVARVLAG NVKHKIPVGV YAPWCQGMVF
ITGRKGEEIE LEKQQGSLSI YTPKQIVAAL TKEWGLTAPR SHQVTDEQKE MVLKTIGQVA
LVEQRNNKIQ DFTKLKCLFI QSGLEVWQAE YNPGDWTAPW LLKILIPTQF TDQIQSQNHE
TQLRAEFKRL QALTGCSGVP YCAPLIQDGE QLVLPIRMPR GVPLNVLETE SLTTYQLLEI
LRRSVSGLQQ IHRRGFTVGG WTSNCVFVSD MGDVEFIDIK DTLNTGEDIQ AYAQGFLALA
EQTNQPRIYQ WYQVAAKGGG GDLDALRCDL SALIDNGVCD TLPEKLEITV GAIVDHHYRL
EQFIAATRHS QFWRARHIQG HYQCGISVYS KVESNWPTLS NLYRSLSKLH HPHVENVLAF
GQLPQSEELF IARSWEYGVS LDELSDIQLG QPVMWFTQLL TGLQYMHQMD IYHGAICPKN
IICNQEKAIL VNFGIGLDIA TSHYASRYAD PKLWAAEGDA EKDLYGLVAS FISTLAPVSL
QGDGGQEGII QALNSFDKQW FGEKTFDTCM KVLNFEFDVS QGTNYQEAFD VVECLV
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