| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1548 |
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| Symbol | |
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| ID | 5614157 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1849076 |
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| End bp | 1849861 |
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| Gene Length | 786 bp |
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| Protein Length | 261 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640932417 |
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| Product | ABC transporter related |
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| Protein accession | YP_001473287 |
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| Protein GI | 157374687 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG4167] ABC-type antimicrobial peptide transport system, ATPase component |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.73885 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.000980474 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACGACGC CACTACTACA AGTTAATAAT CTCAGTAAGC GCTTTTTTAC CGGTTACAAG
AGATTTAGAC GTACTTATAC CCAAGCACTG GACCCTGTTT CATTTGAGCT AAACACAGGC
GAGACCTTGG CTATTGTCGG TGAGGCGGGT TCAGGCAAGA GTACACTTGC ACGAATTCTT
GTTGGCGCAG AGACTCGCAG TGGCGGAGAG ATCTATTTCG AAGGCGATGC ACTAGAGACC
CGAAACCTGA AGCAACGTTG TAAATTAATC AGAATGATTT TTCAAGATCC TAACACTTCA
CTCAACCCGA GATTAACTAT CGGCGATCTT TTAGATGAAC CTCTCAAGTT CAATACAAGT
CTCAATGAAA AAGAGAGAAA AGAGCAAGTG GTCGACAAAC TGAGAAAAGT CGGCCTGCTG
CCGGAACATG CTGAATTTTA TCCTCATATG ATATCTGAAG GAATGAAGCA GCGGGTAGCC
GTTGCCCGCG CCTTAATGCT AAATCCAAAA ATCATCATTG CCGATGAGGC GTTAACGGCA
CTGGACTTAT CGGTACGTTC GCAGATCCTC AACTTGCTGC TTAAACTACA GAAAGAGATG
GGACTCTCCT ATATTTTTGT CTCACACAAC CTCAATATCA TTCGCCACTT TAGTGATAAG
ATTATGGTCT TGCATAATGG ACAAATGGTG GAAAAGGCCA CAACAGAAAA TTTATTTAAC
TCTCCTCAAC ATGAGTATAC CCAAAGGTTA ATTCAAGAGC AGGCATTGTT AAATCCCAAA
CGCTAA
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| Protein sequence | MTTPLLQVNN LSKRFFTGYK RFRRTYTQAL DPVSFELNTG ETLAIVGEAG SGKSTLARIL
VGAETRSGGE IYFEGDALET RNLKQRCKLI RMIFQDPNTS LNPRLTIGDL LDEPLKFNTS
LNEKERKEQV VDKLRKVGLL PEHAEFYPHM ISEGMKQRVA VARALMLNPK IIIADEALTA
LDLSVRSQIL NLLLKLQKEM GLSYIFVSHN LNIIRHFSDK IMVLHNGQMV EKATTENLFN
SPQHEYTQRL IQEQALLNPK R
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