| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1496 |
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| Symbol | |
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| ID | 5611980 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1775972 |
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| End bp | 1778122 |
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| Gene Length | 2151 bp |
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| Protein Length | 716 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640932362 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_001473235 |
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| Protein GI | 157374635 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGTTTT CATTAAGCAA GACAGCCCTT GCCACTCATT GTGCATTGCT TTGTCTTACC
CTTCCCTCTT TCGCCACCCA CGCAGCAGAT AAGACATACG CTACAGCTCA GTCAATGGAG
CGTATGATAA TAACGGGGAG CCGCTCGGTA GAGCGAATCG ATGAGGTCCC CTCTTCGGTT
ACCCTGATCG ACAACGAGTC GCTAAAGCAA GATATGTTGG TCAGCTCTGA GCTACAAAAC
ATCCTCGCAT TTCGTGTACC TGGCATGGCA CCAAGCTCAG GGACTTCGAG CAACTCAGGG
CAAAGCCTGC GTGGCCGTCA GGCGCTAATC ATGATCGATG GAGTACCTCA ATCGACACCA
CTGAGAAATG GTCAGTTGGG TATTCGCTCC ATCGATGCCG GGGCTATCGA ACGCATCGAG
GTGATCAAGG GCGCGACCTC TATCTATGGT AACGGCGCTT CAGGCGGTAT CATCAACTAC
ATCACGAAAA AAGCCACTAA CGACGACAAG GCCAGGCTAG AGTTAGGCGC TTCGAGTAAG
TTCAGCGCGG TAAAATTTGA AGATACACCG GGTTATCGTT TCGATGCCTC GATAGACGGT
ACCAATGATA ACTTCAGCTA TGTGCTCAGT GGCGCTATCG AAGAGACCGG CCTGCAACGT
GATGCAGAGG GTGATGTCAT AGGCCTGAAG TATGGTCTGT CAGAGGCCAA GTCCAAGAAC
CTGTTCACTA AGCTGGGCTA TGCGTTCGAT GAAGAGAAGT ACCTGCAACT CACCTATAAC
TACTACGAGG CCCAGCAGGA AGCGGATTAT GTCGATGTGG TCGGGAGCGT CAATACCGGC
GTAAAAACCT ATGCCATCAA AGATACTAGC GGTAACCCAA GGCTCGGAGC GCCGCAGGGG
CCGCGCGGTA ACCATAACCT TATGCTCAAG TATATTGACG ATGAACTGTT TGCCAATACT
CAGTTAACGG TCGACGGCTA CGCCCAGATC ATCGAAAACA TGTTCTTCTA TTCGACCAAC
CTCTCCAATC CCAGTGAAGG CTACGCCGGC GGCCAGTCAC TGATTAAATC CGACAAGAAA
GGGTTGCGAG TTAACCTTAA TACTCAGATA GACTGGGATA ATGTCGAAGT CAGCTTCATC
TATGGTCTGG ATGCACTCAA CGACGTCAGC TCTCAACCAC TGGATGATGG ACGCATCTGG
GTACCGGAGA TCGACATGAC CAACCTTGCG GCTTATCTGC AGGCAAAAAT CATCATAGAC
AATGACTGGA TTGTTAAAGC CGGGGTACGT CAGGATAGGG TGGATCTCAC CGTCGATAAT
TATGAGACCC TGAAGGTATG CCGCGATGCA AATACCTGCT CGGTCCCCAT GGACGTTAAA
GGGGGAGATA TCGATTACGA CACCACGACC TTTAACTTAG GTGTCAGGTA CAACATGAAT
GAGCACTTCA GCCCCTTTGT AAGCTTCTCC CAAGGTGCCG ATATCTCAGA CTTAGGCCGC
TTGCTGCGCA CCGCAACGGT CGATGATATC TCGCTTATCC GCACAGAAGC CTCGGTTGTC
GATAACTACG AAGTGGGCTT CTCGGGACAA TTTAACGATT TCACCTACGA GCTGGCCGTA
TACCGCAGTA ACTCAGATCT GGGGACGGGT AACAAATATG ATGAAGCTAC CGGCGTGTAC
ATGCCGGTAC GTGCACCACA GAAGATCTGG GGCTATGAGG CACAATTGAG CTATCAGATT
CAGGATCACT TACGCAGCAA CGTCACTTAC AGCTGGATTG AGGGTAAAGA TACCGAGAAT
GACGTCTATC TCGACGGTAA GGCAATCTCA GCCCCCAAAT TTACCGCCGG CATCGACTGG
CAGCCGTTTG ATGCGGCTAA CCTAGGCATT AATTACCTCT ATGTGGGCGA CCGCGATCGC
TTCGAGCCGA CAAACGGTAA CTATGTCGGT TCCCAGGGGC CTGTGAGCAG CTATAATCTG
GTCAACCTCA GCAGCAGCTA CAGGATTGAT AACTGGCAAC TGTCACTGGG TGTAGAAAAC
CTGCTCAATG AAGACTACTA CTCGGCCCGC TCCCAGGCAT TTACCTACAA GGGTTATAAC
ACTAAGGGTC TGGGAACCAC GGTAAACCTT GGAGTTAAGG CGAGCTTCTA A
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| Protein sequence | MPFSLSKTAL ATHCALLCLT LPSFATHAAD KTYATAQSME RMIITGSRSV ERIDEVPSSV
TLIDNESLKQ DMLVSSELQN ILAFRVPGMA PSSGTSSNSG QSLRGRQALI MIDGVPQSTP
LRNGQLGIRS IDAGAIERIE VIKGATSIYG NGASGGIINY ITKKATNDDK ARLELGASSK
FSAVKFEDTP GYRFDASIDG TNDNFSYVLS GAIEETGLQR DAEGDVIGLK YGLSEAKSKN
LFTKLGYAFD EEKYLQLTYN YYEAQQEADY VDVVGSVNTG VKTYAIKDTS GNPRLGAPQG
PRGNHNLMLK YIDDELFANT QLTVDGYAQI IENMFFYSTN LSNPSEGYAG GQSLIKSDKK
GLRVNLNTQI DWDNVEVSFI YGLDALNDVS SQPLDDGRIW VPEIDMTNLA AYLQAKIIID
NDWIVKAGVR QDRVDLTVDN YETLKVCRDA NTCSVPMDVK GGDIDYDTTT FNLGVRYNMN
EHFSPFVSFS QGADISDLGR LLRTATVDDI SLIRTEASVV DNYEVGFSGQ FNDFTYELAV
YRSNSDLGTG NKYDEATGVY MPVRAPQKIW GYEAQLSYQI QDHLRSNVTY SWIEGKDTEN
DVYLDGKAIS APKFTAGIDW QPFDAANLGI NYLYVGDRDR FEPTNGNYVG SQGPVSSYNL
VNLSSSYRID NWQLSLGVEN LLNEDYYSAR SQAFTYKGYN TKGLGTTVNL GVKASF
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