Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1487 |
Symbol | |
ID | 5612679 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 1765809 |
End bp | 1767020 |
Gene Length | 1212 bp |
Protein Length | 403 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640932353 |
Product | putative NupC family protein (permease) |
Protein accession | YP_001473226 |
Protein GI | 157374626 |
COG category | [F] Nucleotide transport and metabolism |
COG ID | [COG1972] Nucleoside permease |
TIGRFAM ID | [TIGR00804] nucleoside transporter |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAGTTGT TGATTAGCTT GGCCGGGATC TTTTTTCTTA TACTCTGTGG CTGGATTTTC TCTGAAAATC GCAGTGCAAT AAAATGGCGT ACCGTTATCG GTGCACTAAC CCTTCAGGCA GGCTTTGCAG CCCTGGTTCT CTACGTCCCT ATGGGACAAC AGGTACTGGG CAGCGTCAGT CAAGGCGTCG CATCGGTATT AGGATTTGCC GACGAAGGCA TTAAATTTCT GTTTGGCGAT CTGGCCAGCA CAGGATTCAT ATTTGCGATT AGAGTATTAC CTCTGGTGAT ATTCATCAGT GCCCTCATCT CCATGTTGTA CTACTTCGGC ATCATGCAGT GGGTGATAAA AATCATTGGC GGAGCACTAC AAAAGTTACT AGGCATCAGC CGCGCAGAGT CTCTGGTCGC CACTGGCAAC ATATTTCTGA GCCAGGGTGA GTCACCACTC TTGGTTAAGC CTTTCCTGCC CCAAATGACC CGCTCGGAGC TCTTTGCCGT TATGACCGGC GGAATGGCAT CGGTAGCGGG TAGTGTCTTA GGTGGATATG CGGGTTTAGG TGTCGACCTT AAGTTCCTTA TCGCGGCGAG CTTTATGGCC GCACCGGGCA GTCTGATGAT GGCAAAGCTA CTGGTACCGG AAGTCGAGAC TCCTGACGCA GGCCAGGCAA TCGATATGAA CCAGAGTGAG CACAGCAATG CCATCGACGC CTTAGCCTCC GGCGCCATGA ATGGTATGCG GGTAGCCGTG GCTATCGGTA CTATGCTTAT CGCATTTATC AGCGTCATCG CGATGTTTAA CGCTGGGCTG GAACAATTGG GTTTATGGTT CAACTTCGAA GGTGTCACGC TTCAGAGCTT GCTGGGTTAT CTCTTCGCAC CGGTAGCCTT TATCATAGGT GTACCTGCCA ATGAGATGAT GCAGGCAGGG GGATTCATCG GGCAGAAGCT TATCCTGAAT GAATTTGTCG CCTTCATGGA CTTTGTCTCG GTGAAAGATC AACTCTCGGC TCACTCTCAG ATCATCATCA CCTTCGCTCT ATGTGGTTTT GCCAACATAG GTTCAATTGC GATTCAGCTC GGCAGTATAG GTGTGATGGC ACCGGAGCGC AGCGCTGATG TGGCAAACTT AGGCTTTAAG GCCGTTCTTG CCGCCACATT GGCTAACCTG ATGAGTGCAG TTTTAGCCGG AATATTTTTC AGTATTGCTT AA
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Protein sequence | MQLLISLAGI FFLILCGWIF SENRSAIKWR TVIGALTLQA GFAALVLYVP MGQQVLGSVS QGVASVLGFA DEGIKFLFGD LASTGFIFAI RVLPLVIFIS ALISMLYYFG IMQWVIKIIG GALQKLLGIS RAESLVATGN IFLSQGESPL LVKPFLPQMT RSELFAVMTG GMASVAGSVL GGYAGLGVDL KFLIAASFMA APGSLMMAKL LVPEVETPDA GQAIDMNQSE HSNAIDALAS GAMNGMRVAV AIGTMLIAFI SVIAMFNAGL EQLGLWFNFE GVTLQSLLGY LFAPVAFIIG VPANEMMQAG GFIGQKLILN EFVAFMDFVS VKDQLSAHSQ IIITFALCGF ANIGSIAIQL GSIGVMAPER SADVANLGFK AVLAATLANL MSAVLAGIFF SIA
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