| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1460 |
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| Symbol | |
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| ID | 5610871 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1731907 |
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| End bp | 1733823 |
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| Gene Length | 1917 bp |
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| Protein Length | 638 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640932326 |
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| Product | AMP-dependent synthetase and ligase |
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| Protein accession | YP_001473199 |
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| Protein GI | 157374599 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0365] Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.0844879 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGACAC TGAATTGCGA GTTACACCAT CAGATACATA GCGAGTCATT GACAGAGCCT
GACAGATTTT GGGCCAATGC GGCACAAGAG TTAGACTGGG ACCGGAACTG GGACAAGGTG
CTGGATGACA GTAAGGCCCC TATCTATTCA TGGTTTGCGG GAGCAGAGCT TAATACTTGT
TACAACGCTG TCGACAGGCA CGTGGAAAAT GGCCGGGGAG AGCAAGTTGC CATTCAATAT
GTCAGTCCGG TGACAGAGTC TGAATACGGT ATTACCTATA ATGAACTGCT GGCTCAGGTT
AGCAGACTGG CCGGATATAT GGACTCGGTC GGCGTGAAGA AAGGCGACCG CGTTATCATC
TATATGCCCA TGGTCCCTGA AACGGCCTAT GCCATGTTAG CCTGCGCTCG TATTGGTGCG
ATTCACTCAG TGGTTTTTGG CGGCTTTGCA GCCAGTGAGC TGGCGACCAG AATCGATGAC
GCTAAGCCCA AATTGATCCT GTCTGCCTCG TGTGGCATCG AGCCTTCCGG CGTCGTGCCT
TATAAGCCTC TTCTAGATGA TGCGATAGGG CAATCTAAGC ATCAGGTGGA TACCTGTATC
ATCTTAAACC GTAGTCAATA CACGGCAGAT CTGGTAACGG GGCGCGATGT GGACTGGCAA
AGCGCGGTTG CAAGTGCACC AAATATTGCC TGCCAAACCG TTGCTGCAAC CGATCCTCTC
TATGTGTTGT ATACCTCAGG TACGACAGGT CAACCTAAAG GCGTTGTGCG TGACAATGGT
GGCCACGCCG TTGCACTTTC ATGGTCAATG AAGCATATCT ACGATATCGC TGCCGGTGAT
GTTTTTTGGG CGGCGTCCGA TGTTGGCTGG GTGGTGGGTC ATTCCTATAT TGTCTATGGT
CCGCTTCTGG TCGGCGCCAC AACCGTCCTG TTTGAGGGCA AACCGATCGG AACACCGGAT
CCCGGCATTT TCTGGCGGAT AATAGAGAAG TATCAGGTTA AGAGTTTCTT CACCGCACCA
ACCGCGATAC GCGCCATTAA GCGAGACGAC CCTGATGGAG ATTTTCTTAA GGATGTCGAT
CTCAGCTGTC TCAAAACACT TTTCCTGGCG GGAGAGCGCT GCGATCCCGA TACCCTTCAT
TGGTCTGAGG AGAGACTCAA TAAGCCGGTG ATCGATCACT GGTGGCAGAC CGAAACCGGC
TGGCCGGTTG CGGCTAACTT GATGGGGACG GCACCCGTTG AGGTTAAGGC GGGATCGCCG
GCCTTGCCCG TGCCGGGTTA TCAGGTTGAG GTGGTAGACG AGATGGGGGA CGTTGTCGAG
CCGGGCGCTT CGGGGAATGT GGTGATTAAA TTACCTCTAC CGCCGGGGAC GTTAACTACG
CTATGGAATA ATGAGCAGCG TTATCTGGAC AGTTATCTCT CTATGTATCC AGGTTACTAC
CTGACCGGGG ATGCCGGTTA CATGGATGAG GATGGTTACC TGTATATCAT GAGTCGTATC
GATGACATCA TCAATGTCGC CGGTCATCGT CTCTCTACCG GGCGATTCGA AGAGGTGCTC
TGCCAACATG AGGCCGTGGC CGAAGTGGCG GTGATTGGCG TCGACGACAA ACTCAAGGGG
CAACTGCCTT TGGGCTTGGT TGTTCTCAAG AAAGGGGTGA CCTTGTCCGA TGAGGAGTTA
TATCGCGAGC TGATCGCTCT GGTTCGGGAA CATATAGGCC CTGTCGCATC ATTTCGTCTG
GTCAGTGCGG TTCAGAAATT GCCAAAGACC CGCTCCGGCA AGATTTTACG GGGAACGATG
AGAAAGATAG CCGATAATCA GGAGTATAAG ATGCCGGCAA CCATAGAAGA TCCGCAAACC
TTAGAGTTGG TGCGCAATGC ACTCACGCGT ATGGGTTATG CGGACGCCCA TGTGTAG
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| Protein sequence | MKTLNCELHH QIHSESLTEP DRFWANAAQE LDWDRNWDKV LDDSKAPIYS WFAGAELNTC
YNAVDRHVEN GRGEQVAIQY VSPVTESEYG ITYNELLAQV SRLAGYMDSV GVKKGDRVII
YMPMVPETAY AMLACARIGA IHSVVFGGFA ASELATRIDD AKPKLILSAS CGIEPSGVVP
YKPLLDDAIG QSKHQVDTCI ILNRSQYTAD LVTGRDVDWQ SAVASAPNIA CQTVAATDPL
YVLYTSGTTG QPKGVVRDNG GHAVALSWSM KHIYDIAAGD VFWAASDVGW VVGHSYIVYG
PLLVGATTVL FEGKPIGTPD PGIFWRIIEK YQVKSFFTAP TAIRAIKRDD PDGDFLKDVD
LSCLKTLFLA GERCDPDTLH WSEERLNKPV IDHWWQTETG WPVAANLMGT APVEVKAGSP
ALPVPGYQVE VVDEMGDVVE PGASGNVVIK LPLPPGTLTT LWNNEQRYLD SYLSMYPGYY
LTGDAGYMDE DGYLYIMSRI DDIINVAGHR LSTGRFEEVL CQHEAVAEVA VIGVDDKLKG
QLPLGLVVLK KGVTLSDEEL YRELIALVRE HIGPVASFRL VSAVQKLPKT RSGKILRGTM
RKIADNQEYK MPATIEDPQT LELVRNALTR MGYADAHV
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