| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1428 |
|---|
| Symbol | |
|---|
| ID | 5610290 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 1692487 |
|---|
| End bp | 1693569 |
|---|
| Gene Length | 1083 bp |
|---|
| Protein Length | 360 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640932294 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001473167 |
|---|
| Protein GI | 157374567 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1253] Hemolysins and related proteins containing CBS domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.194371 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCACCC TCATCGTTAT TGTAGCCGTT GCTATCGGGA TATCCTTCCT TTGCAGCGTT
TTCGAAGCAG TCCTTCTCTC TGTCACTCCC AGTTATGTTG CAACTTTGGC GCATTCAAAT
CCTGAAGCGG CCGTGAGACT CGGAAAGCAG AAAGATAATG TCGAATCTCC ACTGGTATCG
ATTCTCACTC TAAACACTAT TGCCCACACC GTCGGTGCAG CAGTGGCGGG CGCTCAAGCC
GCTAAGGTAT TTGGTGATGA GATGCTCGGT GTGTTCTCCG GTGTCCTGAC GTTCCTGATC
CTGTTTTTCT CTGAGATCAT TCCTAAGACA TTAGGTGCAA ACTATTGGCG TTCACTCGCG
CCATCGGTTT CAATCGCCCT CTTGTGGATG GAGCGCCTCA CTAAGCCGCT AATCTGGATG
TCACAACAGG TGACTCAGCT CTTAGGAAAA GGAGATGAGG GTCAGTATAT TCGTCAAGAG
ATGAGTGCGA TGGCGAAAAT AGGACATGAA TCCGGAGAGC TCGACGAACA AGAATCACTG
ATTTTGACTC AGATGCTATC GGTCAAAGAG ATGCCGGTTA GTGCCATTAT GACGCCTAGA
ACCGTGATAT TCAGCCTGTC GGGAGCGCTT TCACAGGAGG AGTTTGCCCT CAAGCACAAG
GGCACGCCAT TTTCTCGTAT ACCCATTTAC GATAAAGACC CCGATGATAT CATCGGTTAC
ATCAACCGTA ATGATATCTT GCTTGCCGAA CGAAAAACCC CTCAAGCCCC AATCTGTGAA
TTGAAGCGCA GTTTGGTCGT TGTTCCCGAA ACCGCGAAAA TTCTGCCTTT GTTTCAGCTG
CTCATTAAGC GAAATACCAA GATTGCTATT GTGGTTAACG AATACGGTAC CGGCGAAGGG
ATAGTGACAT TGGAAGATAT CGTCGAATCC CTTTTGGGTC TCGAGATCGT CGACAGCAAC
GATCCCGTCA CCGACATGCA GCAATTAGCC CACAAGTTAT GGGAAAAGCG CATGAAGGAC
AAGGGGATCC GCCTCTCCGA TGATGGCGAG TTTGAATCTT ACATCGAGAC GCCAAAACCT
TAA
|
|---|
| Protein sequence | MITLIVIVAV AIGISFLCSV FEAVLLSVTP SYVATLAHSN PEAAVRLGKQ KDNVESPLVS
ILTLNTIAHT VGAAVAGAQA AKVFGDEMLG VFSGVLTFLI LFFSEIIPKT LGANYWRSLA
PSVSIALLWM ERLTKPLIWM SQQVTQLLGK GDEGQYIRQE MSAMAKIGHE SGELDEQESL
ILTQMLSVKE MPVSAIMTPR TVIFSLSGAL SQEEFALKHK GTPFSRIPIY DKDPDDIIGY
INRNDILLAE RKTPQAPICE LKRSLVVVPE TAKILPLFQL LIKRNTKIAI VVNEYGTGEG
IVTLEDIVES LLGLEIVDSN DPVTDMQQLA HKLWEKRMKD KGIRLSDDGE FESYIETPKP
|
|---|
| |