| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1413 |
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| Symbol | |
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| ID | 5609884 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1673704 |
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| End bp | 1675467 |
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| Gene Length | 1764 bp |
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| Protein Length | 587 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640932279 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001473152 |
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| Protein GI | 157374552 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.502195 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTATAG ACAATGTCTA CGAAGAGCGG CTCGATGAAC TCGAGCTCGC GCTTAAATCT
AACCCATCAC TAGCCTTATC TCTTATCGAT GATCTGGTAT CCGAACAAGC TGAACTCACC
TCTGAGCAGT ACTCCAGATT GCTGGTCTTG CAGAGTGTTC AACACCTGTA TGGCGCTAGG
TTCGCTGAGG CCATTACAAC ATTAAAGCAG GCCGAGAGGT TAAACCCGCC CAAAAAATTA
CTCAACTCTA TCTATCTCTA TCAGGCGAGT GCCTATCTGG GTCAACATGA TTATCAGCAG
GCCCTGGATG TGATGTCGAC AAACCTCTCC AGGATTGAGG AGATAGAAGA TACCGAAATA
AAAATCAGCT CCTATCTGAG ATTAGTGAAC CTCTATTTAG ATCTACAAGC CTACGGTGAG
ATGTCCCGGT ATGCGGGGCT TGCGTTGAAG CTTAGTAAAG GTAACAGCGC CAAGAACGAG
TGTTACTCTC TGCTTTACTT AGCGGTTGCC GAGTTGAAAA CACAAAACCT GGAGATGGCA
GAAAGCCGTT TTAAAAACAG CCGCGACTTT TGCCAGCTAA ACAATTTGCC TGTCATCGTC
GCCATGTCTA AAAAGGGCTT GGGCGATGTG GCAATAAAAC AGGGAAACTA TGCGCTTGCG
GAAAATTATC TGCTTCAGGC TTTAGAGGAG TATCGTCTTT TTAAGTTTCA GATTGAAATT
GACAGTGTTC ACTCTCTTCT CAGTGAGACC TACCTGGGCT TGCTGCAAAC CGAAAAGGCG
CAAGAGTATG CCGGGTTAGT GATGGCGTTA TCCGATGAGC CTATCAACCT CAGTTACAAG
AAGATTGCGT CTAAGGTGCT GGCCGAGCTT GCCAGTAAGC GTGGTGAGCA TGCGCTGGCT
TATCAATATC TGAGCCAACA TCAGAATATC ACCAATACCC ATCTCGATGA CACCAAAGCC
AAAGCGAACG CTTACCAGAT GGCCAAGTTT GAAAACGGTG AGAAAAGCCG TGAAATAAAC
ATGCTTAACC ATGAACGTGA GCTATATACC GCACGGGAGC AGATGAGAGC GTTAAAGCGG
AATAACGACC GTATGGGGCT GTTAATTGTG GGTGGTAGCT TCGTACTGCT GGCCATGTTT
GCCATTGCAA TAACCGGTCA GAAACGTAAA TACAAGAAGC TTGCTCAAAA CGATCCTCTA
ACCGGCATCT TAAACCGTGG TACGGCGCAG AATATGGCGG AAAACCGTTA TATTAAAGAT
ACGTTTAAGT CACTCGAGTT CAGTGTGATC ATGTTCGATG TGGACCACTT TAAACGTGTT
AACGATAATT TTGGTCATGC TACCGGCGAC TGGGTATTGA AACATGTCTG TGAAACCATC
TTAAAAAATT GTCGCTCGAA TGATATTTTT ACCCGATTCG GCGGTGAAGA GTTTGTGCTG
TTTCTCCCCG GTACAGATGC AGAAACTGCG CAGAAGATCG CCGAGCAACA TAGGCTTGCT
ATCGAAGCCA TGGACACTAA GTATTCCGGT CGTGATTTTA CCCTCAGCGG CAGTTTTGGC
GTGACGTCGA GTTCGAGTGC TGACTTGAGC CTGGATCCTT TACTGCACAG AGCCGATATC
GCCATGAATT ATTCTAAAGG GAATGGACTG AATCGCGTTA CCGTATACAC CCCCGAGATT
GGACTGTCCC GTGCCCCCGC TTTTATTGTG AAGTCGGATG AAAGCCCGAG TGAGTTTGCC
GAGAGAACTC AGGTTGAAGT TTAG
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| Protein sequence | MAIDNVYEER LDELELALKS NPSLALSLID DLVSEQAELT SEQYSRLLVL QSVQHLYGAR
FAEAITTLKQ AERLNPPKKL LNSIYLYQAS AYLGQHDYQQ ALDVMSTNLS RIEEIEDTEI
KISSYLRLVN LYLDLQAYGE MSRYAGLALK LSKGNSAKNE CYSLLYLAVA ELKTQNLEMA
ESRFKNSRDF CQLNNLPVIV AMSKKGLGDV AIKQGNYALA ENYLLQALEE YRLFKFQIEI
DSVHSLLSET YLGLLQTEKA QEYAGLVMAL SDEPINLSYK KIASKVLAEL ASKRGEHALA
YQYLSQHQNI TNTHLDDTKA KANAYQMAKF ENGEKSREIN MLNHERELYT AREQMRALKR
NNDRMGLLIV GGSFVLLAMF AIAITGQKRK YKKLAQNDPL TGILNRGTAQ NMAENRYIKD
TFKSLEFSVI MFDVDHFKRV NDNFGHATGD WVLKHVCETI LKNCRSNDIF TRFGGEEFVL
FLPGTDAETA QKIAEQHRLA IEAMDTKYSG RDFTLSGSFG VTSSSSADLS LDPLLHRADI
AMNYSKGNGL NRVTVYTPEI GLSRAPAFIV KSDESPSEFA ERTQVEV
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