| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1322 |
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| Symbol | |
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| ID | 5610095 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1573594 |
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| End bp | 1574724 |
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| Gene Length | 1131 bp |
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| Protein Length | 376 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640932187 |
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| Product | glutaconyl-CoA decarboxylase |
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| Protein accession | YP_001473061 |
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| Protein GI | 157374461 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1883] Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit |
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| TIGRFAM ID | [TIGR01109] sodium ion-translocating decarboxylase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.0119077 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAGGAT TAATTGCATT TTGGTCTGAG TCAGGCATTG CAAATTTTAC CCCTGGGCAG
CTACTGATGA TGGGGGTAGG AGCCTTGCTT CTGTACCTTT CGATTGTGAG AGGCTTCGAA
CCTTTACTTC TACTGCCTAT TGGGTTTGGT GCTATTTTAG CCAATATTCC CAATGGAGGC
TTCACGGAGG AGGGAGGGCT ACTCTATTTT GCTTATCATG TTGGGATTGA AACGGGAGTA
TTTCCGTTGC TCATCTTCAT GGGGGTCGGT GCGCTGACCG ATTTCGGTGC CTTGATAGCC
AACCCTAAGA TGTTGCTTCT GGGAGCCGCA GCCCAATTTG GTATCTTTGC CACATTAATC
GGTGCTATCG CCCTTAATTT TGTCCCTGGG TTTGAATTTT CCATGCAAGA TGCCGGTGCC
ATCGCCATTA TTGGTGGTGC CGATGGCCCC ACGGCTATTT TCTTAGCCTC AAAACTTGCA
CCTGAGTTGT TGGGGGCTAT TGCTGTTGCA GCGTATTCTT ATATGGCTCT GGTTCCGATA
ATTCAGCCGC CAATCATGAA GTTGCTAACG ACAGAGTCTG AACGTCAGAT AAAGATGGAG
CAACTGCGCG AAGTGAGTAA GAAAGAGAAG ATCATCTTTC CGCTTATGGT GCTGGGGTTA
ACTATTCTGT TCCTGCCTGC AGCGACACCA TTGGTGGGCA TGTTTTGTCT GGGCAATTTG
ATGCGTGAGT CTGGTGTTGT AGACAGATTA TCGAGCACGG CTCAAAATGA GCTGATCAAC
ATAGTGACCA TCTTCCTGGG TTTAGCCGTG GGTTCTAAAC TCTCTGCGGA TCAATTTTTA
CAGCTCGAGA CATTAGGTAT CTTGCTCCTT GGCGCCGTTG CATTTGCAAT CGGCACCGCC
ACCGGGGTGT TGATGGCTAA ACTTATGTGT AAATTGTCTG GTGGGAAGAT CAACCCGTTA
ATAGGTGCTG CGGGTGTCTC TGCGGTCCCG ATGGCTGCAC GGGTTGTGAA CAAGGTAGGT
TTAGAGTCAA ATCAACATAA CTTCTTGTTG ATGCACGCTA TGGGGCCTAA TGTTGCCGGT
GTGCTGGGTT CGGCTGTCGC GGCAGGTGTA TTGATTGCAG TATTGGGCTA A
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| Protein sequence | MEGLIAFWSE SGIANFTPGQ LLMMGVGALL LYLSIVRGFE PLLLLPIGFG AILANIPNGG
FTEEGGLLYF AYHVGIETGV FPLLIFMGVG ALTDFGALIA NPKMLLLGAA AQFGIFATLI
GAIALNFVPG FEFSMQDAGA IAIIGGADGP TAIFLASKLA PELLGAIAVA AYSYMALVPI
IQPPIMKLLT TESERQIKME QLREVSKKEK IIFPLMVLGL TILFLPAATP LVGMFCLGNL
MRESGVVDRL SSTAQNELIN IVTIFLGLAV GSKLSADQFL QLETLGILLL GAVAFAIGTA
TGVLMAKLMC KLSGGKINPL IGAAGVSAVP MAARVVNKVG LESNQHNFLL MHAMGPNVAG
VLGSAVAAGV LIAVLG
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