| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1168 |
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| Symbol | |
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| ID | 5614055 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1388645 |
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| End bp | 1390633 |
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| Gene Length | 1989 bp |
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| Protein Length | 662 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640932017 |
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| Product | chorismate mutase |
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| Protein accession | YP_001472907 |
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| Protein GI | 157374307 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0077] Prephenate dehydratase
[COG1605] Chorismate mutase
[COG2876] 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase |
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| TIGRFAM ID | [TIGR01797] chorismate mutase domain of proteobacterial P-protein, clade 1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAAAC CACAGCCTTT GAACCATACA CGTGAGCAGA TAACCGCATT AGACAAAGAT
CTGTTGGCTC TTCTGGCTAA GCGGCGCGAA TTAAGCCTCG ATGTTGCTCG CAGTAAAGAG
GTCGATATTC GGCCAATAAG AGATACTCAA AGAGAGAAAG AGTTGCTGGC CAGACTCGTC
AAACAAGGGC GGGAACAGGG GTTAGATGCA CACTATGTCA TCTCTCTCTA TCAGAGTATT
ATCGAAGACT CAGTGCTTAA CCAACAGGCT TATCTTCAGG GCCGTGCAAA CCCGGACACT
CAGAAGCAGC AATACTGTGT GGCTTACCTT GGCGCCAGGG GGTCCTATTC ATATCTTGCT
GCCAACCGCT ACTGCGATCG CCGTCAGGTT GACATGCAAG ACCTAGGCTG TAAAAGCTTC
GATGAGATTG TACAGGCGGT AGAGTCCGGC CACGCCGACT ATGGTTTTCT GCCTATAGAA
AACACATCAT CGGGATCGAT CAATGAAGTT TATGATGTAC TTCAGCATAC GAGTTTAGCC
ATCGTTGGTG AGACCACCAT TGAAGTTGGT CACTGCCTTT TGGCCAAATC GAGTGGTAAT
GTCAGTAAAA TCAAAACGGT ATATGCTCAC CCTCAACCCA TTAGTCAATG TAGCCGCTAC
CTAAGCCTGC ATCCGGAATT TAAACTTGAG TATTGCTCCA GCAGTGCAGA GGCGATGGAA
AAGGTCATAG AAAGTGATGA CCCGACAGTC GCAGCCATTG GAAGCGCCGA AGGGGGCGCA
CTCTATCAAT TAGAAGCGAT TGCCCAGGAC TTAGCTAACC AAAAGATTAA CCAAAGCCGT
TTCATTGTCG TAGCCAGAAA AGCCATAGCC GTACCCGAGC AGCTTCCGGC GAAATCAACA
CTTATCATGG CGACTGGACA GAAACCGGGT GCCTTGGTGG AAGCCTTGCT GGTGCTTAAA
GCCCATAACC TGAATATGAG TAAACTCGAG TCACGCCCTA TTCCCGGTAC CCCATGGGAG
GAGATGTTTT ATCTGGATCT CGATGCGAAC CTTTCCAGTG AATCGATGCA GTCCGCATTA
AAAGAGCTTG AACGTATCAC TCGCTTCATC AAAGTATTAG GTTGTTACCC TTGCGAAACG
GTTAGCCCAA CTCAGCTTTC AAATAGTCAG CTGATGATTG AGCCCGATAC CAGCCGCGCC
GAACATGCCG GCGATTCAAC AGAGCAATCC CCTATCGCTA CAAACAAACA GGTGAGATAT
TGCAAAAAGT ATAATCAAGA CGCGACCCAA ATCACCAGTG GTCAATTGCA AGTTGGGGAT
AAGCAGTTTG GCGCAATCGC GTTAATCTCA TTACCACAAG ATAATGCCCT CTACAGCCAG
AAGGCCAAAT CAATAAAAGA GGCTGGATTT CAGGCAGTTG TGCTGGAAGG TTTATCACGA
CAACAAGATG CAACGGCCAA TGTTCTCGAG TTTAAAAAAG CGCTACATCA ATTTGACCTC
GAATGCATAC TTTCTATCGA ACATGAGGCC GAATTAAAAC TTGCAACGGA GCATGGCAAC
ATTTTACTTG TAACGGGAAA GCAGATGAAT AATCTGGCGC TGCTTAAACG TATTGGATCC
TTACATATTC CCGTGATTTT AGAGCGAAAC ACCATGGCGA GTGTAGAAGA GTTCTTAGGG
GCTGCCGAGA GTATTTTGGA ACAAGGGAAT CAGCAAGTTA TCCTGTGTGA ATCGGGTGTC
AGAACCTTTA ATGATTCGGT TATGCCATCT CTGGACTTAG CCGCCTTAGT GGACATCAAA
GCGATAAGCC ACTTACCGAT ACTCGTTAAC CCAAGTTATG CATCCACTGC TGAGACTCTC
TCTTCACACG CTAAAGCGGC AAAACAGCTT AACGCCGATG GTTTGGTCCT TAACTTCTCA
TCTGTTGCTG ACACCTTTAC AGATGAACTA ACCACTAACG GTGACATTCT CAGAAGCCTA
TACCAGTAA
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| Protein sequence | MNKPQPLNHT REQITALDKD LLALLAKRRE LSLDVARSKE VDIRPIRDTQ REKELLARLV
KQGREQGLDA HYVISLYQSI IEDSVLNQQA YLQGRANPDT QKQQYCVAYL GARGSYSYLA
ANRYCDRRQV DMQDLGCKSF DEIVQAVESG HADYGFLPIE NTSSGSINEV YDVLQHTSLA
IVGETTIEVG HCLLAKSSGN VSKIKTVYAH PQPISQCSRY LSLHPEFKLE YCSSSAEAME
KVIESDDPTV AAIGSAEGGA LYQLEAIAQD LANQKINQSR FIVVARKAIA VPEQLPAKST
LIMATGQKPG ALVEALLVLK AHNLNMSKLE SRPIPGTPWE EMFYLDLDAN LSSESMQSAL
KELERITRFI KVLGCYPCET VSPTQLSNSQ LMIEPDTSRA EHAGDSTEQS PIATNKQVRY
CKKYNQDATQ ITSGQLQVGD KQFGAIALIS LPQDNALYSQ KAKSIKEAGF QAVVLEGLSR
QQDATANVLE FKKALHQFDL ECILSIEHEA ELKLATEHGN ILLVTGKQMN NLALLKRIGS
LHIPVILERN TMASVEEFLG AAESILEQGN QQVILCESGV RTFNDSVMPS LDLAALVDIK
AISHLPILVN PSYASTAETL SSHAKAAKQL NADGLVLNFS SVADTFTDEL TTNGDILRSL
YQ
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