| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1103 |
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| Symbol | |
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| ID | 5612148 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1312362 |
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| End bp | 1313789 |
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| Gene Length | 1428 bp |
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| Protein Length | 475 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640931952 |
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| Product | peptidase M23B |
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| Protein accession | YP_001472842 |
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| Protein GI | 157374242 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0739] Membrane proteins related to metalloendopeptidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.123313 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGAAAGG TTATTACGTT ATTAAAATTA CTGCCTAGAT TGCATCAAAT GCTGCTGACA
CTTCTGGTTT TGGTCACACT GACCATTCTT CTTATCCCGG CCGATGATGC CCAGGCATCC
AAAAACACCA ATACTCAGCT TTCAGGCAGT ATCGATCTCG GCAATAACTC GACCGACTCA
GTATCAAATA CTGAAGCGCG TAATGCTCAG CAGTTAAAAC TCCCACTGGC ATTTCGCAAA
CCCACACCGC CATCGGGAAA CCATTCCGCT TCAAACGCTG AATCTAATCA TATTGAACCT
CTAGCTGACG GTTCAATGGA GAAACTAAAA GCTAAGCAAG CAGAAAATTT AGATGTTGAA
CGTTTTCAGG TAAAAAGCGG AGATACCTTA GCCGCTCTCT TTATTCGGGC AGGCCTAAGC
TCCAGAGATG TCTATGAGAT AACCTTACTG CCTAAGGCAA AGAAGAACCT GCTCAAAATC
ATGCCGGGTG AAGAGCTCAT TATCGCGAAA GATTCGGCGG GTGAATTAGC CGAACTTAAA
TACCAGCTCA ACCCGATCTC GACTCTCATC ATCACTAAAA ATGAAGCTGG CTATAAAGAG
CTCATCTCAG ACAAGCAGGT AGAGAGTCGT AACAAATTTG CCAGTGCCAC CATAAGCAGT
AACTTCTGGA ATGCCGGAGT CGGCGCAGGA TTAACGCCAA ACCAGATCAT GCAACTGGCC
ACTATTTTCG GCTGGGACAT CGATTTCGCA CTGGATCTCA GAAAAGACGA TCACTTCGCG
CTCATCTTCG AAGAGGAGTA TGCCGACGGT GAGTTCCTGA GAAACGGGAA TATTCTCGCG
GCCGAGTTCA GTAACCAGGG TGACCGCTAC ACGGCGGTGC GTTATACCGA TGGTAACTAC
TACTCCGAAG AGGGCCGTAG TATGCGTAAG GCCTTCTTGC GCTCCCCTGT CGACTTTAAA
TACGTAAGCT CAAGCTTCAA CCCCAAACGA CTTCATCCGG TCACGGGAAA GGTCAGAGCA
CATAGAGGCG TAGATTACGT CGCCAAGGTG GGCACGCCGA TTAAAGCCGC GGGTAAAGGA
CGCGTCATCA AGTCAGCCTA TAACCAATAC AATGGAAACT ATGTGTTCAT TAAACATAAT
GACACCTATA CCACTAAGTA TCTGCACCTG AAGAAGCGTA AAGTGAAGCA GGGCGCGACC
GTAAAGCAGG GGCAAGTCAT CGGAACCTTA GGTTCTACCG GACGTGTCAC TGGAGCACAT
CTGCATTACG AATTTATCGT CAACGGCGTT CACCGTAACC CGAGAACAAT AAAACTTCCC
AAATCATTGC CTATTGCCAG TAAAGATAAA CCTAAGTTTA TGGCACTTAG CAAACAGATC
ATGACTAAAC TTCAACGTAA CAAACAGGTT TACCTGGCAT CTCAATAA
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| Protein sequence | MGKVITLLKL LPRLHQMLLT LLVLVTLTIL LIPADDAQAS KNTNTQLSGS IDLGNNSTDS
VSNTEARNAQ QLKLPLAFRK PTPPSGNHSA SNAESNHIEP LADGSMEKLK AKQAENLDVE
RFQVKSGDTL AALFIRAGLS SRDVYEITLL PKAKKNLLKI MPGEELIIAK DSAGELAELK
YQLNPISTLI ITKNEAGYKE LISDKQVESR NKFASATISS NFWNAGVGAG LTPNQIMQLA
TIFGWDIDFA LDLRKDDHFA LIFEEEYADG EFLRNGNILA AEFSNQGDRY TAVRYTDGNY
YSEEGRSMRK AFLRSPVDFK YVSSSFNPKR LHPVTGKVRA HRGVDYVAKV GTPIKAAGKG
RVIKSAYNQY NGNYVFIKHN DTYTTKYLHL KKRKVKQGAT VKQGQVIGTL GSTGRVTGAH
LHYEFIVNGV HRNPRTIKLP KSLPIASKDK PKFMALSKQI MTKLQRNKQV YLASQ
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