| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0952 |
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| Symbol | |
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| ID | 5611265 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1135847 |
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| End bp | 1136782 |
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| Gene Length | 936 bp |
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| Protein Length | 311 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640931800 |
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| Product | malate dehydrogenase |
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| Protein accession | YP_001472691 |
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| Protein GI | 157374091 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0039] Malate/lactate dehydrogenases |
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| TIGRFAM ID | [TIGR01772] malate dehydrogenase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0373108 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAGTTG CTGTACTTGG TGCCGCTGGC GGTATTGGCC AGGCTCTTGC CCTACTATTA
AAAACTCAAT TACCTGCAGG TTCAAAATTG TCACTTTATG ATATTGCTCC TGTAACACCT
GGTGTTGCGG TTGATCTTAG TCATATCCCG ACAGCCGTAG AAGTTAAAGG TTTTGCCGGT
GAAGATCCAA CACCTGCGCT TGAAGGTGCG GACGTTGTAT TGATCTCTGC CGGTGTGGCT
CGTAAGCCTG GCATGGATCG CTCGGATCTA TTCAATATCA ATGCCGGCAT TGTTAGAAAT
CTGGTCGAGA AGTGTGCCGC TGCTTGTCCT AAAGCACTTA TCGGTATTAT CACTAACCCG
GTTAACACTA CAGTCGCCAT CGCCGCAGAA GTACTAAAAG CTGCTGGTGT ATACGATAAG
AATCGTCTTT TCGGTGTAAC GACACTCGAT GTGATCCGTT CTGAAACCTT TATTGCCGAA
GCAAAAGGTC TGAATGTTGA TGATGTTAAG ATCAATGTTA TCGGTGGCCA CAGTGGTGTG
ACTATCCTTC CGCTTCTTTC TCAAGTTCAA GGCGTAAGCT TTAGCGATGA AGAAGTTGCA
GCATTGACTA CACGTATCCA AAATGCGGGT ACAGAAGTGG TTGAAGCTAA AGCCGGTGGC
GGAAGCGCGA CTCTTTCCAT GGGCCAGGCG GCATGTCGCT TCGGTTTGTC TCTGGTACGT
GGTCTTCAAG GTGAAGAGAA TGTGATTGAG TGTGCCTATG TCGACGGCGG CAGTGAACAC
GCAGATTTCT TCGCACAGCC TATCCTCTTA GGTAAGAATG GCGTTGAATC GGTACTGGCC
TACGGTGAAG TCAGTGAATT CGAAGCCAAT GCTCGTGATG CTATGCTCGA TACACTCAAG
GCCGATATCA AGCTAGGTGT AGAATTCGTT AAATAG
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| Protein sequence | MKVAVLGAAG GIGQALALLL KTQLPAGSKL SLYDIAPVTP GVAVDLSHIP TAVEVKGFAG
EDPTPALEGA DVVLISAGVA RKPGMDRSDL FNINAGIVRN LVEKCAAACP KALIGIITNP
VNTTVAIAAE VLKAAGVYDK NRLFGVTTLD VIRSETFIAE AKGLNVDDVK INVIGGHSGV
TILPLLSQVQ GVSFSDEEVA ALTTRIQNAG TEVVEAKAGG GSATLSMGQA ACRFGLSLVR
GLQGEENVIE CAYVDGGSEH ADFFAQPILL GKNGVESVLA YGEVSEFEAN ARDAMLDTLK
ADIKLGVEFV K
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