Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0872 |
Symbol | |
ID | 5611446 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 1036941 |
End bp | 1037969 |
Gene Length | 1029 bp |
Protein Length | 342 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 640931720 |
Product | uncharacterized FlgJ-related protein-like protein |
Protein accession | YP_001472611 |
Protein GI | 157374011 |
COG category | [R] General function prediction only |
COG ID | [COG2992] Uncharacterized FlgJ-related protein |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 35 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGATCTCA ATAGCGGTAA ATTCATCATA GCGCTACTGC TAATAGGCAC CTCACTCTAT TGGGGCGAGT CCTGGTTATC TGAGCCCCCT GAGTCTGGTG ATGTCAGTTC GAGTGAGGTC GCTCCTGTCG CCGCTACGGC TTCAGGCAAG GCGATAAACT TAAGTTCGGC TGAAAATATT TTGATTCAGC TGGCGCAAAA CCGTCCAACC GAAGCGGCCA AAGATGTCAG ACTAGGTTCG TTGGACGATC TTATGGCCCT GTTCGACTCG CTCGATTACA ACACTCAAAG CTGGATTGAA GGTAATCGTG AAGTCCCACG CCTCACCTTC GAGCGGGTCA GCGACAGTTG GCATAAGACC TCCAATGAGA TCCCCGTACA ACAGAAGAAG ATGGTGTTCT TTCGTCTGAT GGCCCCCCTT ATTTTGGTTG CCAACGAAAA CATTCTATTA GAGCGTCAGA TAGTCGAAAC GGCTCAACTC AGCGACAAAA AGCTGCAAGC AATCGCGATC AAATACAAGG TGCTCACGAA GCAAGCAGCC CCCCTGAATG AGGGCCAGCG TCAAGCTTTG TTAGCGCGAG TCGATATCAT GCCGCCTTCT CTGGTACTGG CCCAAGCCGC AGAGGAGAGT GGATGGGCAA CATCCAGATT TACCTTAGAG GGGAACGCCT TCTTTGGCCA ATGGGACTTC AGTGGAAATG GGATGGTGCC CAAACAGCAA CGTAAAGAGC TGGGGAACTA TGGACTGGCA CGGTTCGATA GCCCACTGGC ATCGGTTGAA GGTTATATGG TTAACCTCAA CACTAATAAT GCCTACCAGA AACTGCGCCA TCTTCGCGCA GAACTCAGGC AGAACAAGCA AGCTATCACA GGAGTGTTAC TCGCAGGTAC CCTGGACAAA TATTCTGAGC GAGGCCAGGC CTATATCGAC GGGATCAGAG AGATGATCCG CTATAACCAG CTGGATCAGG TAGACCAGGC TTACCTCAGT AGCGCCGCTC CTCTTCATCT GATTGGTAAA AACCAATAA
|
Protein sequence | MDLNSGKFII ALLLIGTSLY WGESWLSEPP ESGDVSSSEV APVAATASGK AINLSSAENI LIQLAQNRPT EAAKDVRLGS LDDLMALFDS LDYNTQSWIE GNREVPRLTF ERVSDSWHKT SNEIPVQQKK MVFFRLMAPL ILVANENILL ERQIVETAQL SDKKLQAIAI KYKVLTKQAA PLNEGQRQAL LARVDIMPPS LVLAQAAEES GWATSRFTLE GNAFFGQWDF SGNGMVPKQQ RKELGNYGLA RFDSPLASVE GYMVNLNTNN AYQKLRHLRA ELRQNKQAIT GVLLAGTLDK YSERGQAYID GIREMIRYNQ LDQVDQAYLS SAAPLHLIGK NQ
|
| |