| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0862 |
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| Symbol | |
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| ID | 5613882 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1026798 |
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| End bp | 1028147 |
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| Gene Length | 1350 bp |
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| Protein Length | 449 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640931710 |
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| Product | sodium:dicarboxylate symporter |
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| Protein accession | YP_001472601 |
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| Protein GI | 157374001 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1301] Na+/H+-dicarboxylate symporters |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTGAAC AAAAATCGTC GATCGTTGGC CGTGTCTGGT CACGCTGGAT GTCTGTGCCT
CTTTGGCTAC AAATTCTTAT CGGTATGCTT TTAGGTATTG CCACGGGACT CGGTTTAGGT
GAGCAAGCGG TTGTACTAAA GCCGATAGGC ACGCTTTTTG TTAATACCAT TAAGATGTTG
ATAGTTCCGC TGGTATTTTG CTCTCTTATT GTGGGGGTCA CCTCCATGCA AGATACCGCT
AAGATGGGAA GGATCGGTTT TAAATCATTT GTTTTTTATC TCGGTACCAC TTCGATAGCA
ATCACCTTAG GGCTAGCGGT CGGACACTTT ATGCAGCCAG GTTCAGGCTT GGGAATGCAG
GCCGATGCAA GTCTTACTGT GGCCAAAGAA GTGCCCTCAG TGATGGAGAC CTTAATTAAT
ATTGTACCGA CTAACCCCAT TGCTGCTTTA GCGAGTGGAC AGATCTTGCA AGTGATTGTG
TTTGCGGTCG CCTTAGGTAT CTCTCTAGTG TTGATCGGCG ATCATGGAAA ACCGGCTATT
AAGGTGTTTG AAAGTTTAGC CGAAGCCATG TACAAGTTAA CCGATATGAT CATGAAGCTG
GCGCCTTATG GGGTGTTTGG TTTAATGGCA TGGGTGGCGG GTGAGTATGG TATTGAGATG
CTGCTGCCGT TGATAAAAGT CATTATTGCC GTCTATATCG GTTGTTTCAT ACACGTCGTG
GGCTTTTACA GTGTGGTGCT GAGTGTATTT GCTAAGCTCA ATCCTGTGCA GTTTTTTAAG
GGGATCAGTA ACGCATTGGC AGTGGCATAC ACCACATCAA GCTCCGCTGG CAGCCTGCCA
GCCAGCATGA AATGCGCCAG TGAGTCTTTA GGGATTAACA AGAAGATCTC CAGTTTCGTT
TTGCCACTGG GGACGACCAT CAACATGGAT GGAACGGCAC TCTATCAGGG GGTAACAGCC
CTGTTTGTTG CGCAGGCCTT TGGCATCGAC CTGACCTGGG TGGATTACAT CACCATCATT
TTAACCGCTA CGCTGGCCTC TATTGGTACA GCCGGTGTAC CTGGTGCGGG TCTGGTGATG
TTGACTCTTG TGCTGACCAC CGTCGGCTTA CCTCTCGAAG GGGTTGCGTT AATCGCTGGT
ATCGATAGGG TCCTGGATAT GGCACGCACC GTTGTAAATG TATCTGGTGA TTTAGTGGCG
ACGACTGTTA TCGCTAAATC GGAAGGTGAG CTTAATGTCG CTCACTATAA TGCAGATATG
GAACAGAGTG CATTGATAGC GGAGCAGTTA GCCATACAAA ATGATGAAGC GGCCATGAAC
ACCAAGTTCA AGGGAGTGGA GCGCGCCTAG
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| Protein sequence | MSEQKSSIVG RVWSRWMSVP LWLQILIGML LGIATGLGLG EQAVVLKPIG TLFVNTIKML
IVPLVFCSLI VGVTSMQDTA KMGRIGFKSF VFYLGTTSIA ITLGLAVGHF MQPGSGLGMQ
ADASLTVAKE VPSVMETLIN IVPTNPIAAL ASGQILQVIV FAVALGISLV LIGDHGKPAI
KVFESLAEAM YKLTDMIMKL APYGVFGLMA WVAGEYGIEM LLPLIKVIIA VYIGCFIHVV
GFYSVVLSVF AKLNPVQFFK GISNALAVAY TTSSSAGSLP ASMKCASESL GINKKISSFV
LPLGTTINMD GTALYQGVTA LFVAQAFGID LTWVDYITII LTATLASIGT AGVPGAGLVM
LTLVLTTVGL PLEGVALIAG IDRVLDMART VVNVSGDLVA TTVIAKSEGE LNVAHYNADM
EQSALIAEQL AIQNDEAAMN TKFKGVERA
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