| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0711 |
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| Symbol | |
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| ID | 5611971 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 857531 |
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| End bp | 858799 |
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| Gene Length | 1269 bp |
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| Protein Length | 422 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640931555 |
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| Product | integral membrane sensor signal transduction histidine kinase |
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| Protein accession | YP_001472450 |
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| Protein GI | 157373850 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.00353371 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTTGAAGT CACTCACGAA AAGAAGTCCT GCTAATACAA TGACAAGCAA ACTTAGCCTC
TATTTTGCCT TCATTGCCAT AGTCGTAGGG GCAACACTCT TTGTGCTCAG TCAATCGATG
CTCTATTGGT TGGAGGATGA GTTAAACCGC AGAACATTAC AGCAAAGTGC CGGTACAGCA
ATCGTTCAAT TCAAGCATGA GGCTAAATCC CCGTTAATTA TCACAACAAG TATCCGGGCC
TATAATCGCG TTCAGGATCT ACCGGAAAAA TATCGAGCCT TAGCTCAGTA CCCTATCGGT
TTTCTCGATG AGATCCAGAA CAATAATTTC AATGATCTTT TTCTTTACCG CAGTGAGTAC
ATTCAAGATG GTAAACGCTT TCCCTTGCTG ATCGTCATGA ATGCCGAACA TGTCGAATTA
TCTCCAACCG AATGGCGCAG CATTAACCTG ATATCGATCA TCGTCATGTT GGTGCTTTTC
TTGCTGTTTG GCTTCGCTAT CATCAAGCTC ACCCGCAGAT TGATAACGCC CATAACCCAG
CTGAGTCAAC AGCTAAAATG CACCGACCCC AATAGCCACT TCTCGGTACC GGGCGACTCG
GCCATCGAAT TTAATGAATT AGCGGATAGC CTTAACCGTT ATCGCCAACA AAATGAGAAG
TTAATTCGGC AGGAGCAAGC CTTCGCCAGA TATGCCAGCC ATGAATTAAG AACCCCACTC
ACCGTCATTC AGGGGGCGAC CTGGTTACTT AAGCAAAAAT CTGAACCTGA ATATCAAGCA
AGGCAGAGAG AGAGAATTGC TAAAGCTGCG ACGGATATGC AGCATACCAT TGAGGCACTG
CTTAGCCTGG TTAAACAGGA ACAAGCGAAA GAGAACGTCA CACTCAGAAC CATTAACCGC
AGGGAGCTCG AACATATCAT AGAGTACGTA CAACCGCTGG CAGAGAGTAA AGGCCTGAGC
ATCACGCTGC AGATGCAATG CGAACCTAAG ATCCAGCCAA GTGAGTCCGT GCTACGTATG
TTACTGACAA ATTTACTCAA CAACGCAATC AATGCCAGCG ATGCAGGTGT TATAGCCATA
GAGGTTGATC AAGACAGCAT TCGGGTTACC GACCATGGCA CCGGGCTCAA TGAGTCGGAG
CAATCCGAGC AAGGGCATGG TTTGGGGTTG TTGATTGTCG ATGCACTGTG TCAAAGATAC
GATTGGCAGT TTAACTTGAG CCCGGCTCCG GAAACTGGCT GTATCGCAAC GCTTAGGTTT
GCCCAATAG
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| Protein sequence | MLKSLTKRSP ANTMTSKLSL YFAFIAIVVG ATLFVLSQSM LYWLEDELNR RTLQQSAGTA
IVQFKHEAKS PLIITTSIRA YNRVQDLPEK YRALAQYPIG FLDEIQNNNF NDLFLYRSEY
IQDGKRFPLL IVMNAEHVEL SPTEWRSINL ISIIVMLVLF LLFGFAIIKL TRRLITPITQ
LSQQLKCTDP NSHFSVPGDS AIEFNELADS LNRYRQQNEK LIRQEQAFAR YASHELRTPL
TVIQGATWLL KQKSEPEYQA RQRERIAKAA TDMQHTIEAL LSLVKQEQAK ENVTLRTINR
RELEHIIEYV QPLAESKGLS ITLQMQCEPK IQPSESVLRM LLTNLLNNAI NASDAGVIAI
EVDQDSIRVT DHGTGLNESE QSEQGHGLGL LIVDALCQRY DWQFNLSPAP ETGCIATLRF
AQ
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