| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0658 |
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| Symbol | |
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| ID | 5613199 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 797868 |
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| End bp | 798773 |
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| Gene Length | 906 bp |
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| Protein Length | 301 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 640931503 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_001472398 |
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| Protein GI | 157373798 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.135872 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCTTA GCTACTTACA GACTTTTCTA GCCGTCGCCG AAGAAGGCAG TTTCACAAAG
GCGGCGGACG TACTTGATGT ATCAAAAGGG TTAGTTTCTC GTCATGTATG TAATCTTGAA
AAAGCGTTAA ATTCCAAATT GTTTCATCGA ACTACTCGGC GTATAGCGTT AACTGAAGTT
GGAGAAGAGT TATTTACCAA AGCCAAACAA ATTCAACTGT TAGCTTCTGA AGCGGAAATA
CGGGTAAAGG ATATTACTCA AGAGTTCTCT GGAGATTTAA AAGTCAGCGC CCCGTATGAG
TTTGGGCGAG CACTTTGTGA TCATGTTATT CCATCATTTC TGCGCCAACA TCCACAAATA
AACCTCATTC TTGATTTTGG TCCTATCAAA AGAGAAATAG CATCTGGTGA CTGCGATGTC
GCTTTTCGGG CATATGAAGA GTTGCCGAAT GATGTCGTTG GTAAAGAGTT AGGGTTTATT
AGAAATGTAC TGGTTTGCAG CAAGGACTTT GCCCTGCATA ATGAGATTAA ATCAATTAAA
GATTTGCATC ATTGTGCTTT TATCTTAAAT GGACAGAACG AACGTTGGAA TCAACTGGAG
CTGGTGAATG GCGATAAAGA ATATAAAATT GAAGTTGGTG GAACTTTACG TTCAAATACA
TATAGTTCTA TCTTTTCGCT AGCTAAGCAA GGTTTAGGGA TCGCCAGTCT TCCTTACTAT
CAGGTAGAGG GATCGCTAAA AAGCGGGGAA CTAATTCACC TTCTTCCTGA TTGGGCTATA
AAAACACATA AGCTAAGTTT ACTATATGCC CAAAGACGGA TAACGCCGAG AAAGCTGGTA
ACGTTTAATC TGGCGGTAAA AGAATGGTTG GGATCGAGTC AGTTATATTT GATAAATAAA
TCATAG
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| Protein sequence | MNLSYLQTFL AVAEEGSFTK AADVLDVSKG LVSRHVCNLE KALNSKLFHR TTRRIALTEV
GEELFTKAKQ IQLLASEAEI RVKDITQEFS GDLKVSAPYE FGRALCDHVI PSFLRQHPQI
NLILDFGPIK REIASGDCDV AFRAYEELPN DVVGKELGFI RNVLVCSKDF ALHNEIKSIK
DLHHCAFILN GQNERWNQLE LVNGDKEYKI EVGGTLRSNT YSSIFSLAKQ GLGIASLPYY
QVEGSLKSGE LIHLLPDWAI KTHKLSLLYA QRRITPRKLV TFNLAVKEWL GSSQLYLINK
S
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