Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0625 |
Symbol | |
ID | 5613037 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 753945 |
End bp | 756851 |
Gene Length | 2907 bp |
Protein Length | 968 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640931470 |
Product | ATP-dependent helicase HepA |
Protein accession | YP_001472365 |
Protein GI | 157373765 |
COG category | [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG0553] Superfamily II DNA/RNA helicases, SNF2 family |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 47 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCTTTT CCTTAGGTCA ACGCTGGATA AGTGATACCG AATCTGAACT TGGTTTAGGT ACAGTAGTCG CACTGGAAGG CCGTATGGTC ACCCTGATGT TTCCGGCAAC GGATGAGAAT AGATTGTTCT CACGCACCGA TGCTCCCTTA ACTCGTGTTA TTTTTAATCC GGGCGATAAA GCCGAAAGCC ACGAAGGCTG GAGCCTGACC GTTAGTGAAG TCGAGGAGAA AGATAACCTC ATTATCTATC ATGGTATTCA TAGCGAAACC GGTGAGCAGG CCAGTCTGAG AGAGACCTTG CTTAACCATA ATATTCGTTT CAATAAACCA CAAGATAGAC TCTTTGCCGG ACAAATTGAT CGCCTCGAAC GTTTCGGCGT CCGCTATCAA TGCCAGTTAT TAAGACACAA GTTAGCAACC TCCGATCTTC TTGGCTTACA GGGCCCAAGA GTCGGTCTGA TCCCTCATCA GCAGTGGATT GCCCATGAAG TCGGACGCCG TTTTGCCCCC CGGGTATTAC TGGCCGATGA GGTGGGACTG GGTAAGACGA TTGAAGCGGG TCTGATTATT CATCAGCAAC TGCTTACCGG TCGCGCCGAA CGTATTCTGG TTATCGTACC CGATACACTA CGCCATCAAT GGCTGGTCGA AATGCTGCGT AGGTTTAACC TCAAATTCTC AGTCTTCGAT GAAGATAGAT GCATCGAAGC CTATGCCGAT AATGATAACC CTTTCTATAC CGAACAACTG GTTATCTGTT CACTCGAACT TCTGCGTAAG AAAAAACGCT TAGAGCAAGC CTTGGATGCC GACTGGGATC TGATGGTCGT CGATGAAGCT CATCACCTGG AGTGGACCGA AGATGCGCCT AGCCGTGCAT ATCGTGTCGT AGAAGCACTC AGTGAAGTCG TCCCCGGCGT TCTCTTGTTG ACAGCGACCC CGGATCAATT GGGCCATCAG AGTCACTTTG CCCGTTTACG TCTGCTGGAT CCGGATCGTT TCTACGACTA TGAGGCGTTC CTTAAAGAGG AGAGCAGCTA TAAAGATGTT GCCAGTGCCG CCGACGCCCT GGCCAGCGGA AATAAGCTAC CCGACGATGC TATCAATAGC CTTACAGAGT TACTGTCTGA AAAAGATATC ACACCTAGCA TTAACGTGAT TCAGGCGACA GATATCGATC CCGATCAACA GCAAGATGCC CGCGATGAAC TTTTGCAGGA GCTACTGGAC AGACACGGTA CCGGCCGCGT CCTGTACCGT AACAGTCGTG CCTCGGTAAA AGGCTTCCCG ACCCGTATCT TCAATGCGTA TCCTCAGGCG ATGCCATCTC AATATGTCAC TGCCGCGCGC GTCGGTGCCA TGATGAATGG CCATCTCGAT ACTCAAGGTA AAGTTAAGCA AGCACTGAGT CCCGAAAAAA TCTATCAGGA TTTTGACAGC AACAGCGCCA GTTGGTGGAA GTTCGACCCC AGAGTCGACT GGCTCATCAA TTTCTTAAAA GAAAACCGCA GAAAGAAAGT GCTGATCATT GCTAGTCAGG CAGAAACAGC GCTCAGCCTC GAAGAGGCAT TGCGTACACG TGAAGGTATT CAGACGACCG TATTCCATGA AGGTATGTCT ATCATTGAAC GCGATAAAGC GGGAGCCTAC TTTGCCCAAG AAACGGGTGG TGCTCAGGCT CTTATCTGTA GCGAAATTGG TTCGGAAGGT CGTAACTTCC AGTTCGCCAG CCAGCTTATC CTGTTCGATC TGCCACTTAA CCCTGATCTG CTCGAGCAAC GTATCGGCCG TCTGGACCGT ATCGGTCAGA ACAATGATGT CGAGATCCAC GTACCTTACC TCGAAAAAAC GGCTCAAGAG TGCTTGATGC AGTGGTACCA CAAAGGACTC AACGCGTTTG AACAGACTTG TCCGAGTGGA CATATTCTCT TCAGTGAGTT TGCAGAGCCC TTGTTAGATG TGCTGATTAA TCAAAATGAT GACTCGCTCA CCGAGCTGCT TAACCATACC CAAACTCGAT ACAAAGAGTT GAAAACTGTG ATGGAGCAAG GTCGGGACAA GCTACTTGAG ATTAACTCAC ATGGTGGCGA ACGGGCTAAT AAGTTAGTAC AGAGCCTGGC CGCTCGTGAT GAAGATACTC AGCTTATCGG CTCAGTTATA CGCTTATGGG ATGTTATCGG TGTCGAGCAG GAGGACTGTG GTGAAAACGC TATCGTCTTG AATCCGAGTG AACACATGAT GTTCCCAACC TATCCGGGTC TTCCCGAAGA TGGCATCACA GTCACCTTCG ACAGAGAGAT GGCATTGTCG CGAGACGATA TTGCGCTTAT CACTCAAGAG CACCCGATAG TGCAGACAGG ACTGGATCTG ATCACTTCAT CTGAGACGGG TACCACCAGT GTTGCCGTGT TAAAGAACAA GGCATTACCG GCTGGAACCA TCTTCCTTGA GCTGATCTAC ATGGCCGATG CTTCGGCGCC TAAGTCCAGC CAGTTATACC GTTACCTGCC GCCAACGCCG GTACGTATCT TACTGGATAA GAATGGTAAT AACCTGTCTG ACAATGTGAC CTATGAGAGC TTTAACAAGC AGCTCAGTGC GGTTAACCGT CATATAGCCA GCAAGTTAGT CAATGCGTCG CAGACGATTT TACATCCTCT GTTCGCCAAG GGCGAAGAGT TTGCCGAAGT TGAACTAAAG CTCTTAGCCG ATAGTGCCAG AGCCAAGATG ACCTCTCAGC TCACATTGGA GTTAGAGCGT CTCGAAGCCC TTAAAGCGGT GAACCCAAAC ATCCGTGATG AGGAGCTTGA GCATATCCGT GAGCAGATGA ATGAGCTCAA TGGATACCTC GATGGCTGTC TGCTGCAACT CGATGCGATT CGCTTAGTTC TTGTAAGTCA CGCTTAA
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Protein sequence | MPFSLGQRWI SDTESELGLG TVVALEGRMV TLMFPATDEN RLFSRTDAPL TRVIFNPGDK AESHEGWSLT VSEVEEKDNL IIYHGIHSET GEQASLRETL LNHNIRFNKP QDRLFAGQID RLERFGVRYQ CQLLRHKLAT SDLLGLQGPR VGLIPHQQWI AHEVGRRFAP RVLLADEVGL GKTIEAGLII HQQLLTGRAE RILVIVPDTL RHQWLVEMLR RFNLKFSVFD EDRCIEAYAD NDNPFYTEQL VICSLELLRK KKRLEQALDA DWDLMVVDEA HHLEWTEDAP SRAYRVVEAL SEVVPGVLLL TATPDQLGHQ SHFARLRLLD PDRFYDYEAF LKEESSYKDV ASAADALASG NKLPDDAINS LTELLSEKDI TPSINVIQAT DIDPDQQQDA RDELLQELLD RHGTGRVLYR NSRASVKGFP TRIFNAYPQA MPSQYVTAAR VGAMMNGHLD TQGKVKQALS PEKIYQDFDS NSASWWKFDP RVDWLINFLK ENRRKKVLII ASQAETALSL EEALRTREGI QTTVFHEGMS IIERDKAGAY FAQETGGAQA LICSEIGSEG RNFQFASQLI LFDLPLNPDL LEQRIGRLDR IGQNNDVEIH VPYLEKTAQE CLMQWYHKGL NAFEQTCPSG HILFSEFAEP LLDVLINQND DSLTELLNHT QTRYKELKTV MEQGRDKLLE INSHGGERAN KLVQSLAARD EDTQLIGSVI RLWDVIGVEQ EDCGENAIVL NPSEHMMFPT YPGLPEDGIT VTFDREMALS RDDIALITQE HPIVQTGLDL ITSSETGTTS VAVLKNKALP AGTIFLELIY MADASAPKSS QLYRYLPPTP VRILLDKNGN NLSDNVTYES FNKQLSAVNR HIASKLVNAS QTILHPLFAK GEEFAEVELK LLADSARAKM TSQLTLELER LEALKAVNPN IRDEELEHIR EQMNELNGYL DGCLLQLDAI RLVLVSHA
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