| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0613 |
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| Symbol | |
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| ID | 5613127 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 741683 |
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| End bp | 743326 |
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| Gene Length | 1644 bp |
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| Protein Length | 547 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640931458 |
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| Product | MscS mechanosensitive ion channel |
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| Protein accession | YP_001472353 |
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| Protein GI | 157373753 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0668] Small-conductance mechanosensitive channel |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.000873032 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTACCGCA TACTCTCTCT GGTGATGCTC ACAATAATCG GGCTCAGCGG CATGCCTTCG
CAAGCGCAAA CCCCAACACC ACCCCTAACC GAGCCCTCGA TTGAAACCAC GGCAGAAGCC
GGTGAACTCT CTTCACTGCA GGATTCGATC ACCCTAGACG TCAACCGTCT CAAGCTGACG
AAGGGGGAGT TAACCAGCTT CACCGAATAC AGAATCAAAA AAAATGCGCA GTTACTGCAC
CTCAAGCTCC AGGAGTTGAT GGATGAGACC CCTCTAAACA GCAAACTATT ACTTCCGCTG
GTTCGGGAGC ATCTGGACTT CATCAATCGG GTAGATATTT ATTATACAGA CGACATTAAA
CAGCTGAGAA GTGAACTTGG TAAAGATAAT GACGCCGCGA TCATGATGCA GCTATCGCTC
AGAGAGAGAG AGCGTGATGC GCAATTGGAA GCAAAACTCG ATACCCTCAA ATGGGCAGAA
AAGTTAGAGA TAGATACAGG CAATCAGGCT GACCTCCTCA TCAAGACATT AGTTAAGCGT
GCGGATAAGC TCAATAGCCT GGTTCAATAC ACGCAAGAGA AGCTACAAGC CGCAGTGAGT
GAAGCAAGTC TTGCCGGCAG TGATGTAACC TCGGAGCAGA CTCTGCTGGT CACTCAGCTT
AACGAGAGAC TGGCTCAAAG CAGCTCCAGT TTAGCCGTCG CCATCGGTCT GCTCGACATA
GTAGGCCAAG ACACCGCCGA GTTAAAACAG ACGCTTTTCA GTACTTCCGG CGACATCACT
CAAGATGTGT TGAACATCGA TGTCGCATCG AGCCTGATTG AGCAGTGGTT TACCGCTGCC
AAGACCCAAG CCATAGACAA TGGACCCGGT GTCATATTTA AGCTGTTTAT CTTCGTCTTG
ATTCTGTTTG TCGCCAACCT GGCGGGCAAA CTGGCTCAGA AAATTGTCAA GAAAACGGTG
AGCAACTCCA AGCTGCAATT CAGCCTTCTT CTGCAGGAGT TCTTTATCTC ACTGTCGGGT
AAGGCCGTAT TCACCTTAGG TGTACTGATT GCCCTTTCTC AGCTGGGGAT TGAGCTCGGC
CCTCTATTAG CCGGTTTCGG TGTTGCCGGT GTGATTATTG GTTTTGCACT TCAGGATACG
CTGTCAAACT TTGCCTCGGG GATGATGATT CTGATCTATC GCCCTTATGA TGTCGGCGAT
CTGATCAATG CTGCAGGCGT GACGGGTAAG GTAAGTCATA TGAGCCTGGT CTCGACCACA
ATTAAGACCC TAGATAACCA GAGATTAATT ATTCCGAATA ATAAGATCTG GGGCGACACC
ATCAACAACA TCACTGTTGA GCATCAAAGA CGTGTGGATA TGACTTTTGG CATAGGTTAC
GGCGATGATA TTGAAAAAGC TGAGCGAGTA ATGAATGCCA TCTTGCTCGA ACACCCTAAG
GTACTTAAAA ACCCAGAGCC TATCGTTAAG TTACATACAT TAGGTGAGTC TTCGGTAGAT
TTCGTTGTAC GCCCTTGGGC TAAGCCGGAA GATTATTGGG AAGTGTATTG GGACGTCACC
CGCACTGTGA AGATGCGCTT CGATGCAGAG AACATCAGCA TTCCATTCCC GCAGCGCGAT
GTTCATATTT ATCAATCAGA GTAA
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| Protein sequence | MYRILSLVML TIIGLSGMPS QAQTPTPPLT EPSIETTAEA GELSSLQDSI TLDVNRLKLT
KGELTSFTEY RIKKNAQLLH LKLQELMDET PLNSKLLLPL VREHLDFINR VDIYYTDDIK
QLRSELGKDN DAAIMMQLSL RERERDAQLE AKLDTLKWAE KLEIDTGNQA DLLIKTLVKR
ADKLNSLVQY TQEKLQAAVS EASLAGSDVT SEQTLLVTQL NERLAQSSSS LAVAIGLLDI
VGQDTAELKQ TLFSTSGDIT QDVLNIDVAS SLIEQWFTAA KTQAIDNGPG VIFKLFIFVL
ILFVANLAGK LAQKIVKKTV SNSKLQFSLL LQEFFISLSG KAVFTLGVLI ALSQLGIELG
PLLAGFGVAG VIIGFALQDT LSNFASGMMI LIYRPYDVGD LINAAGVTGK VSHMSLVSTT
IKTLDNQRLI IPNNKIWGDT INNITVEHQR RVDMTFGIGY GDDIEKAERV MNAILLEHPK
VLKNPEPIVK LHTLGESSVD FVVRPWAKPE DYWEVYWDVT RTVKMRFDAE NISIPFPQRD
VHIYQSE
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