Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0612 |
Symbol | |
ID | 5613126 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 739740 |
End bp | 741452 |
Gene Length | 1713 bp |
Protein Length | 570 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640931457 |
Product | formate--tetrahydrofolate ligase |
Protein accession | YP_001472352 |
Protein GI | 157373752 |
COG category | [F] Nucleotide transport and metabolism |
COG ID | [COG2759] Formyltetrahydrofolate synthetase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0010106 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTGACCG ATATCGAGAT CTCTCGTCAA ACCAAGCATC GACCCATTAC CCAAATCGCA GAAAAATTCG GCATTACCTC ATCTGAGCTT GTCCCCTTTG GAGACGCTAA AGCTAAAGTA AAGTTATCGA TTTTAAAGCG CGTAGATGAC AATTTAGAGG GGAAGTTAGT CATTGTCACG GCCGTGACAC CCACGCCATT CGGTGAAGGA AAAACAGTCA CCAGCATAGG CTTAACTCAG GGATTAAATG CTCTGGGTAA AAAAGCCTGC GCCTGTATTC GCCAGCCCAG TATGGGACCC GTTTTTGGCA TTAAAGGAGG GGCTGCTGGT GGCGGTTACT CCCAGGTGGT CCCGATGGAG GAGTTGAATC TGCATCTGAC CGGTGATATT CATGCCGTGA GTAGTGCCCA TAACTTAGCC GCAGCGGCTA TCGATGCCAG ATTATTTCAT GAGTCCAGAA TGACGGCTGA CGAGTATCGG GAGCAGTCGG GGCAAGCGCC CCTTAATATC GATCCTGAGA AGATCTTGTG GCGCCGGGTG GTGGACCATA ATGAACGCAG TTTAAGAAAT ATTACCGTAG GGTTAGGAGC CAATAACGGC CCCATACATG ACTCAGGATT TGATATCACC GCCGCTTCAG AGCTGATGGC AATATTGGCT TTGAGTCTGG ACTTAAAAGA TATGCGCAGA CGTATCGGAA AGCTAGTGCT TGCACTGGAT AGCCTGGGGC AACCGATAAC TGCTGAGACC TTAGGCGTTG CCGGCGCGAT GACTGTGATC ATGAGTGATG CGATAGAACC TACGCTTATG CAGACATTAA CGGGCGATCC TTGTCTTATT CATGCCGGCC CCTTTGCCAA TATCGCTCAC GGCAACTCAT CGATTATCGC CGACAGGATA GCCTTAAAGC TTGCCGATAT CGTGGTGACT GAAGGTGGTT TTGGATCAGA CATGGGGTTC GAAAAATTCT GCAATATCAA GACGCGCGTA TCGGGTAAGA CACCCGATGC CGCCGTTGTC GTGGTGACAT TAAAAGCCCT GAAAGCCAAC TCGGGTATAG ATTCACAAAA TGATATCAAC CGGCCCGATA TGGCGCGTCT ACAAGTAGGC TTTGCTAACC TGAAATGGCA TATCGATAAC GTGAGTCAAT ATGGCGCTCC GGTAGTCGTG GCGATCAACC GCTTTCCAAC CGATACCTTT GAGGAGCTGA CATGGCTTAA AGCTAAGGTG CTTGAAACTG CGGCTTTTGG TTGTGAGATC TGTGAAGGAT TCAGTCAGGG AGCGAAAGGC GCCGAGGCAT TGGCCAGGGT CGTTGTCAGC GCAACAGAGC AGAAATCTGA TTTTAAATTC CTATACCAGC TCGATGAGAG TATAGAGTCA AAGCTGCTCA CTATCGCCGA GGCAGGGTAT GGCGCGGCAG GAATAAAATT GTCACCAGAC GCCAAAATCC AGCTGCAAGA GATAAACTCA ATGGGGCTGG ATAAACTTGC TGTGTGTGTG GCCAAGACCC CGTTATCGAT AAGTCATGAA CCTAAGGTTA AAGGAGTTCC GACCGATTTC GAGCTGCCTA TCACTCAGTT GAAAATCAAT GCCGGCGCCG GTTTTATAAC AGCCTTGGTC GGTAAGGTGA TGACAATGCC TGGGTTGGGT ATTAAGCCAG GATATTTGAA TGTGGATATC AATGAAGACG ATGAAATAGT CGGATTGGCG TAA
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Protein sequence | MLTDIEISRQ TKHRPITQIA EKFGITSSEL VPFGDAKAKV KLSILKRVDD NLEGKLVIVT AVTPTPFGEG KTVTSIGLTQ GLNALGKKAC ACIRQPSMGP VFGIKGGAAG GGYSQVVPME ELNLHLTGDI HAVSSAHNLA AAAIDARLFH ESRMTADEYR EQSGQAPLNI DPEKILWRRV VDHNERSLRN ITVGLGANNG PIHDSGFDIT AASELMAILA LSLDLKDMRR RIGKLVLALD SLGQPITAET LGVAGAMTVI MSDAIEPTLM QTLTGDPCLI HAGPFANIAH GNSSIIADRI ALKLADIVVT EGGFGSDMGF EKFCNIKTRV SGKTPDAAVV VVTLKALKAN SGIDSQNDIN RPDMARLQVG FANLKWHIDN VSQYGAPVVV AINRFPTDTF EELTWLKAKV LETAAFGCEI CEGFSQGAKG AEALARVVVS ATEQKSDFKF LYQLDESIES KLLTIAEAGY GAAGIKLSPD AKIQLQEINS MGLDKLAVCV AKTPLSISHE PKVKGVPTDF ELPITQLKIN AGAGFITALV GKVMTMPGLG IKPGYLNVDI NEDDEIVGLA
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