| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0593 |
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| Symbol | |
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| ID | 5610335 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 723065 |
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| End bp | 724111 |
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| Gene Length | 1047 bp |
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| Protein Length | 348 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640931438 |
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| Product | putative transcriptional regulator |
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| Protein accession | YP_001472333 |
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| Protein GI | 157373733 |
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| COG category | [K] Transcription |
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| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0273832 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGAGAC AAGCAAACCG CTCGCTGGGT ACGACTTCTA TTCCGCCGGT GCAGCAATTT
TTGCAGGCGG GCAGACACTG TAAGATTGAC GTTTCTTCCG CATTAGAGCA CGCCGACATT
GCACTGTCTG AACTCTACAA GATCGATGGC AGGCTCAGTG GAGAGCAATT CCAGCGTCTG
CTCCACTATC TTATCGACCA GTCTAAACAT CCCCTATTTG GTCTCTACAG CGCCCGATTT
ATTCAGCCTG ATCGCTTCTA TATCTTAGGC CAGATAGGTC TTAACTCGAC GGATCTGTCT
CAGGCTCTGA AGGAAGCCAT GCCATTAGAG AAGTTGGTCG GAGACATGGG GGTCACCGAA
ATAAGGGAGC ATAGCGAAGG CATCAGGATG ATCTGGCACT GCCAGTATAG CCATCCGCTT
GTGATCTCCC ACCTTATCGA TAATGTGCTG GCCTCCTGGG TCAACTTCGC CCGCTTCCTA
CTCGAAGACA ATCAGGCAAC GCCACGAGCT ATCCAACTTC AAAGAGATAA GCCCTCCCAA
GCCGAAGTAA AACAATATGA ACAGCTCTTC GGCTGCCCAG TGCACTTCGC TCAGAGTGAT
AACGCCATAG TCATAGACAA GACGCTACTG GGGCGTCGAC TTCCCGGTGG AAACCTGAAG
CGACTGAGTC AATTAACGAT CAGCGCCAAC TTGAGATTGA ATAATATCGG TGATGCCGAC
GATCTGGAGT TAAAAACCGC CAGGGTGATC CGTCAACTCC TGCCACAGGG TAAAATTCAG
CGGGAACAAG TTAGCGGCCA TCTTCATATG GCTGGTCGGA GTCTGCAAAG ACACTTAATT
AAACAGGGCA GCAGTTATCA GGCGTTACTG GATCAGATCC GCCATGAGAT GGCAGATTAC
TGGCTCACCT GCAGCGAGTT ATCAATGGAT GAGATAGCAC TGCAGTTGGG CTTCAGCGAT
GCAAGAGTAT TTTTTCGCGC CTACAAAACC TGGACCGGAC ACACGCCGGG AGTAACTCGG
ACCAATGCAT CGGACGCAGC AAGTTAA
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| Protein sequence | MKRQANRSLG TTSIPPVQQF LQAGRHCKID VSSALEHADI ALSELYKIDG RLSGEQFQRL
LHYLIDQSKH PLFGLYSARF IQPDRFYILG QIGLNSTDLS QALKEAMPLE KLVGDMGVTE
IREHSEGIRM IWHCQYSHPL VISHLIDNVL ASWVNFARFL LEDNQATPRA IQLQRDKPSQ
AEVKQYEQLF GCPVHFAQSD NAIVIDKTLL GRRLPGGNLK RLSQLTISAN LRLNNIGDAD
DLELKTARVI RQLLPQGKIQ REQVSGHLHM AGRSLQRHLI KQGSSYQALL DQIRHEMADY
WLTCSELSMD EIALQLGFSD ARVFFRAYKT WTGHTPGVTR TNASDAAS
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