| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0546 |
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| Symbol | |
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| ID | 5610596 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 666018 |
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| End bp | 667259 |
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| Gene Length | 1242 bp |
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| Protein Length | 413 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640931391 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001472286 |
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| Protein GI | 157373686 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGTGA TCAATACCAT GCTTAAAGAT CTGGATAAGC GCCAACAGTC TCACGAACTG
GAGAATTTAC ATGTGGCGCC GGTGCAATAT CAAAGCTCCA CGCCTTCAAA GCTTCCCTGG
ATGTTATTGG GCCTCGTCTC CCTTGTCTTA GTGTCAGGTA TCGTTTTCAG TTGGGATCGA
TTAACCGCTA AGGTGTCTGA CGATGAAGCG GTACTCTCAG TCGATAGCAA GTCTACTGAA
AACAAGGCCG TTGATATCAA GCTTGCTGAA AACATGGCAA CTGAGAATAA GGCCGGTGCA
CTAGATGAGC CAGGGCTTAC ATCGGTGGCT GCACCTTCGA TTGGTGCCGA TAATCGGGTG
GCCCCTGAGG GTAAGCCAGA TGCTGGTGTT ACTGTTAAAA GTGAGCAGCG ACTAACCCAA
TTGCCTGCCA TTCCCGAGCA AAAACGCTCG TCTGAGAGTG GAGTAAAAGC TGCTGCCAAA
CCAATCATCA AAGAGCAACA AGTGGCGGCC GAAGAAGCGC TCCCGGTCAT AACCAGTAAA
AAACAAAGGA CGACTTCGAC GCCTGTATCT CAGTCTGTTA AAGCCGAAGC CCCCGTGGTT
CGATCAAGCA ATAATGGTTC AATGGCCGTG ACTGAGGTGA AGCTGTCTGA TGATCAGTTA
GCGCAGAAGA GACTCATGTT GGCGAGCGAG GCGGAGCAGC AGGGAGGGCA AAATGATGCC
ATTGTTTATT ACAATGAAGC TCTCACACTC AACCCCAAAC TACATCAGGC AAGAAAGCAG
CTTGCCGCGC TATATTATGG CAAAGGTCGG CTGGATCTTG CCACCGATCT CTTGAGGCAA
GGGATCAGCC TGTTTCCTGC AGAGTTTGAC TATGTTTTGC TACTCGCTCG CGTTCAGCTG
GCATCGGGTA ACAAGGCGCA AGCCTTATCC ACCCTTAGTC AGATCCCCGA TAGCAGCTTG
TTGGCAAGAC AGAAGTGGGT CGAGCAGAGT AGTCTGGCAC AAGAGGTCAG TGATTTTGTA
TTAGCCGAGC AGGGTTATCG CAACTTACTC GGTGTGGAGG CCAATCAGGC CAGATGGTGG
ATGGGATTAG CCTATTCACT GGATGCACAG GCAAAGTATA GCGCCGCTAA GGATGCCTAC
AAGCAGGCTG TCTTATACAA ATCGGTGCCT GGGAAGGGCT TGTCGGCTCA GGCATTTGAC
TATATTGAAA ACAGATTGAC GCAGTTAGGA GAGATTGAGT GA
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| Protein sequence | MSVINTMLKD LDKRQQSHEL ENLHVAPVQY QSSTPSKLPW MLLGLVSLVL VSGIVFSWDR
LTAKVSDDEA VLSVDSKSTE NKAVDIKLAE NMATENKAGA LDEPGLTSVA APSIGADNRV
APEGKPDAGV TVKSEQRLTQ LPAIPEQKRS SESGVKAAAK PIIKEQQVAA EEALPVITSK
KQRTTSTPVS QSVKAEAPVV RSSNNGSMAV TEVKLSDDQL AQKRLMLASE AEQQGGQNDA
IVYYNEALTL NPKLHQARKQ LAALYYGKGR LDLATDLLRQ GISLFPAEFD YVLLLARVQL
ASGNKAQALS TLSQIPDSSL LARQKWVEQS SLAQEVSDFV LAEQGYRNLL GVEANQARWW
MGLAYSLDAQ AKYSAAKDAY KQAVLYKSVP GKGLSAQAFD YIENRLTQLG EIE
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