| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0539 |
|---|
| Symbol | |
|---|
| ID | 5612501 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 658641 |
|---|
| End bp | 660551 |
|---|
| Gene Length | 1911 bp |
|---|
| Protein Length | 636 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640931384 |
|---|
| Product | regulatory protein CsrD |
|---|
| Protein accession | YP_001472279 |
|---|
| Protein GI | 157373679 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2200] FOG: EAL domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACTAA CACAAATTTT AACCAGAAAA CTCACGGGGT TTTGGCTACT GTCTCTTGCC
GCAGTGGCTT TTATATTCCT GCTTACCGCC TTGGTCAGTT TTACACAGCT GACCTATAAG
TTTCAGCAAC AAAAAGTGTC AGAGATTGAG TCTATGCTTG TGCATCATTA CGAGCACGAC
AGTAACAGCG CTCTATCCTC CTGGCTTCCC TCTATTTTGA CTGCCTATAA GGCATCAAAA
TTTCAACTGC TGGAAAATGG TCAACCTATA TATGAGTATC AAACTGATGA TGCTGGTAAA
GGCCATGTTA CTTACGAGAG CGTGCTGATC GAAGAGCGGC ATCTTAAGCT CTCCATGACG
CTCCCACAGC CGTTTCAAAT GTATGATTTA AGTTGGTATG AACTCCTTAT CCTGTCTGGC
GGCATCATAT CGGTGGCATT TTTTGTTCGA TTTGGACATC AATGGTTGTC AGTTCAGCTC
GTGGGGATCG AAGATCTGGC GGCTCGAAGT AAGCTTATTT TGAACAATGA ATATGAGCAG
GCACTCGCCG AGAAAGGGCA TGGTAAGCCC AGGATGATTA ACCGAGCCTT GACTCATATG
CTGCTCGAAC TCGATGATGC CCAAAAGCAG CGGGCGAGGT TCGATCAGTT TATTCGTTCA
AATACGTTTC TCGATCCTGA AACCGGAATT GGTAACCGAC TATTTTTGAA GAATCGCTTA
GACGCACTGA GTAATGCTCG TGGAATGATG GCTCCCGGAG TGATGTTTCT TTTGGAGATG
GAAGATCTCG ATCTCCTGCA GCAGGAGTTA GCCGACGAGT CGATAGAGGC TCTGCTGCTA
CAGACCATCA ATGATATTAA TCAGATATTA GATACTCAGG CTAACAGTAT ATTTGCCCGA
CGCTCATATA ATCAGTTCGC CATTGTTGTG CCACAGATCT CCTTGAAAGA CGCCGAGAAA
TTAGCGGTAA AACTGCTTAA GGTATGTTTG AGTCAAGCAT TACCGGCAAC ACAAAATAGT
GATGATTTCT ATCATATTGG TGTCGCCTAT TTTAAGGTGG GTGAGACTAA AGAGCAGTTG
CTGGATGAGT CTGAGCGGGC ACTGAGAGCG GCTCAATTTC AAGGAGCCAG TGGTTGGTTT
ATGTATGATA AAGGGGCCGT GGACGAAGAG TTTGCCAAGG GCTCCGTTCG TTGGCGAAGC
TTCCTCGAAT ATGCCCTGGT TAATCGGCGG CTGGTCGTTT TTTCTCAGCC AGTAGTTGAT
AGTGATATGG AGACGCATCA TCTCGAAATT TCGAGTCGTA TCCGTGATAA TCAAGACAAC
CTAATCAGGG CGACCCTCTA TATTCCTATG GCTATTAAGT GTGGTCTAAC GCCTCAGTTT
GAGAGGCAGG TGATCGAGAC CGTGCTGTTT GATCTGCTCA GTGACCGCAG CGACACCACC
ACAAGATACA GTGTGAATTT GAGTCTGGAT ACCTTGCTAA GCCGCGCCTT TATCCGCTGG
CTTAAAACCA CCTTGCTGGA ATATCGACAC CTGACCTCCA GACTGATATT CGAAGTCAAT
GAAGACATCG TCGTTCATCA TAGAGAGCAG CTAAAAGATC GTCTGGATAT GATCAGAAAG
ATGGGGGCAA GCCTCTGTGT CGATCGGGTA GGGCAAGAGG TGGTGAGCAC TCAATATATC
AAAGAGTGTC ATTTCGACCT GATCAAACTT CATCGTTCAA TCGTTCGTCA GATTCATTTA
AGGCAAGAAA ATCAACTGTT TGTTCGTAGT CTGATTGGAG GGTTATACCG CACCGATGTT
CAGGTTTTTG CCGATGGCAT CGAATCATTT GAGGAGTGGC AAACCTTGAA AATCCTGGGG
GTGAGCGCGG GGCAAGGGAG CATCTTCAGC GACCCTATTG AAGAGGTCTA G
|
|---|
| Protein sequence | MKLTQILTRK LTGFWLLSLA AVAFIFLLTA LVSFTQLTYK FQQQKVSEIE SMLVHHYEHD
SNSALSSWLP SILTAYKASK FQLLENGQPI YEYQTDDAGK GHVTYESVLI EERHLKLSMT
LPQPFQMYDL SWYELLILSG GIISVAFFVR FGHQWLSVQL VGIEDLAARS KLILNNEYEQ
ALAEKGHGKP RMINRALTHM LLELDDAQKQ RARFDQFIRS NTFLDPETGI GNRLFLKNRL
DALSNARGMM APGVMFLLEM EDLDLLQQEL ADESIEALLL QTINDINQIL DTQANSIFAR
RSYNQFAIVV PQISLKDAEK LAVKLLKVCL SQALPATQNS DDFYHIGVAY FKVGETKEQL
LDESERALRA AQFQGASGWF MYDKGAVDEE FAKGSVRWRS FLEYALVNRR LVVFSQPVVD
SDMETHHLEI SSRIRDNQDN LIRATLYIPM AIKCGLTPQF ERQVIETVLF DLLSDRSDTT
TRYSVNLSLD TLLSRAFIRW LKTTLLEYRH LTSRLIFEVN EDIVVHHREQ LKDRLDMIRK
MGASLCVDRV GQEVVSTQYI KECHFDLIKL HRSIVRQIHL RQENQLFVRS LIGGLYRTDV
QVFADGIESF EEWQTLKILG VSAGQGSIFS DPIEEV
|
|---|
| |