Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0516 |
Symbol | |
ID | 5613879 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 633420 |
End bp | 634361 |
Gene Length | 942 bp |
Protein Length | 313 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 640931362 |
Product | formate-dependent nitrite reductase, nrfD protein |
Protein accession | YP_001472257 |
Protein GI | 157373657 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG3301] Formate-dependent nitrite reductase, membrane component |
TIGRFAM ID | [TIGR03148] cytochrome c nitrite reductase, NrfD subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 33 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 46 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATCCAT TTCACTTTGA TAGCCTTGTT TGGCATTGGC CTATCGCAAT CTACCTTTTT TTAGCAGGTA TATCGGCCGG AGCTATTTGT TTCGCCGTAT TACTAAAGCA CTTTAAATTA GGTAAGAGTG CTTACAAATC AAGTTTTGTT CAAGCAGCTT GTCTACTTGC ACCACTAGCC GTATTTGCCG GTCTTGGCAT ACTAGTTCTC GATTTAACTA AGCCATTTGA TTTCTGGAAA ATTTTAGTAT TTTACAATCC GACTTCGATT ATGTCTGTTG GAGTTGCTGT GCTAATGATT TACCAGGTAG CCCTATTCTC ATGGTTAGCT TGCTTATTTA AAGAGCCTAT CTCCAATTGG TGTGACCATC GATGGCCATT GATAGATAGA ATATTAAATA TATTAGATAA GCATGAGCCT AGCATCACTG GATTGCTAGT TATGCTAGCT CTATCTTTAG GTGCTTATAC GGGCTTTTTA CTTTCTGCAT TGACCACTTT TCCTATGCTC AACAATCCTG TACTACCTAT GTTATTTCTT GTTTCTGGTA TTTCTTCAGG GGCTGCAGGA ACCTTGTTAG GTGGATTACT CCTCAAGGGG AACCCTGATA GTAAAGAAGT TCATTTTATT CATCACATTG AAATACCTAT AATTTTATTC GAACTGGTTC TGCTTTTTAC CTTCTTCATT GGGTTGATTA TATCTGGCGG ACAGAGCCAA GCAGCGGCAC TTACGGCGCT CGGGGAAGGT TTCTGGGGAT GGGTATTCTG GGCTGGGATC ATTGTAATAG GCTTAACACT ACCGCTCGCC TTCAATTTAT TTATGACAGC CTCTTCTAAA CGAAAACTAT CTTATGTCGC TATTACAGCT AGTTGCAGTT TATTGGGCGT TTTACTGCTT CGTAACTTCA TTCTTTACAC TGGTCAAATG ACTGTCGCAT AA
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Protein sequence | MNPFHFDSLV WHWPIAIYLF LAGISAGAIC FAVLLKHFKL GKSAYKSSFV QAACLLAPLA VFAGLGILVL DLTKPFDFWK ILVFYNPTSI MSVGVAVLMI YQVALFSWLA CLFKEPISNW CDHRWPLIDR ILNILDKHEP SITGLLVMLA LSLGAYTGFL LSALTTFPML NNPVLPMLFL VSGISSGAAG TLLGGLLLKG NPDSKEVHFI HHIEIPIILF ELVLLFTFFI GLIISGGQSQ AAALTALGEG FWGWVFWAGI IVIGLTLPLA FNLFMTASSK RKLSYVAITA SCSLLGVLLL RNFILYTGQM TVA
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