| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0451 |
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| Symbol | |
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| ID | 5610382 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 564174 |
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| End bp | 565103 |
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| Gene Length | 930 bp |
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| Protein Length | 309 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640931296 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_001472192 |
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| Protein GI | 157373592 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATCTTA ATCGCGTACA GATGTTTGCC CAGGTCGTCG AACAAGGCAG TTTCACCGGG
GCAGCAAAAG CCTTAGGATT AACTAAGGCT ACGGTTAGCC GAAAAATTGC CGAGTTAGAG
GCCGATGCCG GCGTTCAGCT CCTGTTTCGT ACCACCAGGT CGCTAAAGCT CACCGAAGCT
GGGTCAGCTT ATTACAATCG GGTTCATCAT ATTCTGATCG ATCTGAAAAA TGCCGAGGAT
CTACTCAGTG CCAGTCAGCA GCTGATCAAG GGAAAACTGA AAATTGTCTG CCCTATCGAG
ATGGGCCAGC TTTTTTTTGG CAGGATCTTT GCTCGATTTT TAAAACAATA CCCGGATATC
TCCATCGAAG CCGAGCTGAG TAACCGAAAA GTAGATGTCA TTGAAGAGGG CGTAGATGTC
CTGTTTCAAA TCACCAGCAG CTCCGACACC CGCCTGCAGA CCTACTCCCT GCTCAATACC
AGCAAGACCT TAATGGCGAG CCCTGAGTAT CTGGCACAAT ACGGCACACC ACAAACCCCA
CAAGATCTCA ATAAACATAG GGCGGTCAAG TTAGAGTCGG CACACATTGA CGGCAGCTGG
ACTCTCTTCG ACGGGAAAGA GTGGATCACC GTAGAGCCCG AAGCTCAGCT CACCGTGAAT
AATGTTACCC TTGCCAGAGA GGCAGCCATA GAGGGGTTGG GGATCACCTC GGTACCAAGC
TTGATAGCCC AGCAAGCCAT AGATAAGCAT CTGCTCATTC CGCTTCTGGA AGATTTCCCC
ATGGCACAGA CAAAGATCAC CATGAGCCTA CCACAGCGTG CATATCTACC CAGGAAGTAC
CGCGTCTTTA TCGAGTTTAT CTACCGGGCT ATGAGCGAAA ACCCCGATAA TCACCTGCTG
GATATTCCAG ACTTCGTCTC GTTAGAGTGA
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| Protein sequence | MDLNRVQMFA QVVEQGSFTG AAKALGLTKA TVSRKIAELE ADAGVQLLFR TTRSLKLTEA
GSAYYNRVHH ILIDLKNAED LLSASQQLIK GKLKIVCPIE MGQLFFGRIF ARFLKQYPDI
SIEAELSNRK VDVIEEGVDV LFQITSSSDT RLQTYSLLNT SKTLMASPEY LAQYGTPQTP
QDLNKHRAVK LESAHIDGSW TLFDGKEWIT VEPEAQLTVN NVTLAREAAI EGLGITSVPS
LIAQQAIDKH LLIPLLEDFP MAQTKITMSL PQRAYLPRKY RVFIEFIYRA MSENPDNHLL
DIPDFVSLE
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