| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0426 |
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| Symbol | |
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| ID | 5613715 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 518556 |
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| End bp | 518966 |
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| Gene Length | 411 bp |
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| Protein Length | 136 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640931271 |
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| Product | methylation site containing protein |
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| Protein accession | YP_001472167 |
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| Protein GI | 157373567 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4968] Tfp pilus assembly protein PilE |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000000282584 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.000848946 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAAGGTC TTAACTTGAA CAAGAGTATG AAAAACGCTA AGGGTTTCAC CCTTATTGAA
TTAATGATCG TTGTTGCAAT CATCGGTATT CTCGCCGCAA TTGCACTACC TGCTTATAAA
GATTATGTAG CTAAAGCTGA TGCATCAGCT GGTGTTGGTA CGCTAGCAGG TTCAAAAACT
AAAGTATCAG AGGTATACTC AATTGATGGT AGCATAGGTT GTACTGATTC TAATGGTGAT
GGTATCCCTT ACTGTGCTGC CGCCGATGGC ATATTAGCGA CTCAGAACGA AGCTGGTACT
GTTATTATTA CCTTAACTCC TGATATTGCG TCAACTCCTG GCAGTATTGA GTGGGGTTGT
GTGCTATCCG GCGCTAACGC CGTTGCAATT AAAGGCTGTA CAGCGCCTTA A
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| Protein sequence | MKGLNLNKSM KNAKGFTLIE LMIVVAIIGI LAAIALPAYK DYVAKADASA GVGTLAGSKT
KVSEVYSIDG SIGCTDSNGD GIPYCAAADG ILATQNEAGT VIITLTPDIA STPGSIEWGC
VLSGANAVAI KGCTAP
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