Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0412 |
Symbol | |
ID | 5613654 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 482148 |
End bp | 482912 |
Gene Length | 765 bp |
Protein Length | 254 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640931244 |
Product | polypeptide-transport-associated domain-containing protein |
Protein accession | YP_001472153 |
Protein GI | 157373553 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1589] Cell division septal protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.466864 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.00145589 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | GTGTCTTGGG CTGAGGTTGG TCAAAGGTGG AAATTGAGGC TGGTGCAGGT CGATTGGTAT CTGTGTCTTG GGCTCCTGTT TTTGCTCTTG GTAGTAATCA GTTTATCGAT GGGAGCTTGG AAACTTAATC TGATAGTTAA TGACGCCGAC GCATTGCCTA TCGAGGCTGT GGCAATCAGA GGAGAGCGTG CCAGAACCTC TGATGAAGAG ATACAGGTCG CATTACAGGA TCTGATGAAG AGAAGCTTTT TCTCGGCAGA TGTCAATCAA GTGCAGGATG CATTAGAGGC GTTGCCCTGG GTTTACCAGG CTTCGGTACG GCGTGAATGG CCTGCAAAGT TAAAGGTATA CCTGGTTGAG CAACAAGTCG TCGCCCATTG GAATGGAGAT GCCTGGCTCA ATATTCATGG GCAGATATTC GATGCACCTA AAAGATCTGA TATTGGGGCT TTGCCTCTGC TTGCCGGCCC GGAAGGGCAA TCGAAAGTGG TATTAACCAC ATATCGGCAA GTTAGCGAGT TGTTGAAGAT AAATGGTTTC AAGTTAGACA GTCTAAGTTT GAGTCCGAGA CATGCATGGC ATGGTTCATT GGATAACGGA ATTATGCTCG AGCTAGGCAG AGAAGATAAA ATGGCAAGGA TACAAAGATT TATCAATGTG TATCCGACAC TGGTTAAGCA GTCAAAGCCA GTTGCCAAGG TAGATTTGCG CTACGACACC GGATTAGCCG TAGGTTGGGA AAATGCACAG AAAGAGAGCC AGTAA
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Protein sequence | MSWAEVGQRW KLRLVQVDWY LCLGLLFLLL VVISLSMGAW KLNLIVNDAD ALPIEAVAIR GERARTSDEE IQVALQDLMK RSFFSADVNQ VQDALEALPW VYQASVRREW PAKLKVYLVE QQVVAHWNGD AWLNIHGQIF DAPKRSDIGA LPLLAGPEGQ SKVVLTTYRQ VSELLKINGF KLDSLSLSPR HAWHGSLDNG IMLELGREDK MARIQRFINV YPTLVKQSKP VAKVDLRYDT GLAVGWENAQ KESQ
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