| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0320 |
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| Symbol | |
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| ID | 5609720 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 373233 |
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| End bp | 374936 |
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| Gene Length | 1704 bp |
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| Protein Length | 567 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640931152 |
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| Product | glycosyl transferase family protein |
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| Protein accession | YP_001472061 |
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| Protein GI | 157373461 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[R] General function prediction only |
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| COG ID | [COG0463] Glycosyltransferases involved in cell wall biogenesis
[COG4261] Predicted acyltransferase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.00187922 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCAATTAG CATTGGTCAT TCCGAACTTC AATCATCAAG CTGCGATCGA GAAGACCCTT
GAATCACTGG CTGAGCTCGA ATTTCATTGC TACCTGGTAG ACGACGGTAG CAATGATGAA
ACGCGGCACC TGTTAATTTC TCTTGCCGAT AAGTATTCAT GGATCACGCT ATTGCATCAC
CCATTTAACC GTGGCAAAGG CGCCGCGGTG ACCACAGGCC TGCGAGCCGC CTATAAAGAT
GGTTACAGCC ATGCACTACA GGTCGATGCC GACGGCCAGC ATAACTTAGA CGATATCCCG
GCCATGGTCG CCAGAGCTGA GGCTAACCCT AAAGCCTTAA TCTCCGGCCT GCCTCAATAT
GACGAGTCCG TTCCTAAGAG TCGATTCTAC GCACGCTACC TCACCCATTT CTGGGTATGG
GTAGAGACCT TAAGTTTCGA TATACAAGAC TCCATGTGTG GCTTTCGTGT CTACCCCCTT
GCCGCCACCG AAAAGTTATT TCTGAGCCAG GCCTTAGGCG AGCGAATGGA CTTCGATATT
GAAGTGTTAG TTCGCCTGCA CTGGGCTGGC ACAGAGGTTA TCCATCTACC GACACAAGTT
ATCTATCCCG AAGATGGCAT CAGCCACTTT CAGGGATTAT GGGATAATCT GCGGATCTCA
GGCATGCACA CCCGACTGTT TTTCGGCATG CTAAAACGTC TGCCACAGAG ATTCATCAAG
AACAACCGGG ATACTCATTG GTCCGGAGTC GCCGAACGCG GCAGTTATTG GGGCATAAAA
TTACTGGCTG CCAGTTATAA ACTCGGCGGA CACTGGCTAT GCCGTGCCAT CATGTATCCC
GTTATCTTCT ATTTCTTCCT GACAGGTCGT AGCGCCAGAG AAGCCTCGCT CACATTTCTG
AAGCAGGTAA AAAGCTATGA TCCGAAGCAG CCACAACTAC AAGGGAATGT CGACTGGCGT
CAAAGCCTCA AACACTTCCT TGCCTTCGGT AATGCAGCCT TAGATCGCAT CGATGCCTGG
TGCGATCGCA TTCAACTCAG TCAGGTCGAT TTTCCCAACC GCGCCCTCCT TGCCGATCAG
CTAGCAGCCG GTCAGGGTGC AGTATTATTG GTCTCTCATC TGGGGAACCT TGAGTTATGC
CGAGCCATCT CCGTTCACCA GAAGCGGGTC AAAGTGAACG TCATGGTGTT AACGGAAAAT
GCCGAAAACT TTAATCGCGT CTTAAAACAA CTCAACCCGG ATAGTTCTCT TAACCTTATT
CAGGTCACCG ACTTAGGCCC GACAACCTCG ATGTTGCTAC AGCAGAAGAT TGAAGAGGGA
GAGTTGGTCG TTATCGCCGG AGATAGAACC TCATCGAACA CCCAAGGCCG GGTGATCTAC
GCCCCCTTCA TGGGAAAACA AGCTCCCTTC CCTCAGGGGC CTTTTATTCT TGCCGGGCTA
CTCGATTGCC CCGTATATTT AATGTTCTGC CTTCGCGAGC AGGGGCGCTA CAGGGTCCAC
TTAGAAACAT TCTCGAATAC ACTGAAAGGC CCCAGAAAAG GTCGAATGCA GAGACTCGAA
GACGCCGTTA ATAACTACAG CTCACGGCTC GAATATTATG CGCGGCGTGA ACCGCTGCAA
TGGTTTAATT TTTTTGATTT TTGGCGTAAG GACTGCGAGA TCCAGCGAAC CAATTTTCAG
GGTAAAGACA GGACAGATAA ATAG
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| Protein sequence | MQLALVIPNF NHQAAIEKTL ESLAELEFHC YLVDDGSNDE TRHLLISLAD KYSWITLLHH
PFNRGKGAAV TTGLRAAYKD GYSHALQVDA DGQHNLDDIP AMVARAEANP KALISGLPQY
DESVPKSRFY ARYLTHFWVW VETLSFDIQD SMCGFRVYPL AATEKLFLSQ ALGERMDFDI
EVLVRLHWAG TEVIHLPTQV IYPEDGISHF QGLWDNLRIS GMHTRLFFGM LKRLPQRFIK
NNRDTHWSGV AERGSYWGIK LLAASYKLGG HWLCRAIMYP VIFYFFLTGR SAREASLTFL
KQVKSYDPKQ PQLQGNVDWR QSLKHFLAFG NAALDRIDAW CDRIQLSQVD FPNRALLADQ
LAAGQGAVLL VSHLGNLELC RAISVHQKRV KVNVMVLTEN AENFNRVLKQ LNPDSSLNLI
QVTDLGPTTS MLLQQKIEEG ELVVIAGDRT SSNTQGRVIY APFMGKQAPF PQGPFILAGL
LDCPVYLMFC LREQGRYRVH LETFSNTLKG PRKGRMQRLE DAVNNYSSRL EYYARREPLQ
WFNFFDFWRK DCEIQRTNFQ GKDRTDK
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