| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0205 |
|---|
| Symbol | |
|---|
| ID | 5614079 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 233033 |
|---|
| End bp | 234256 |
|---|
| Gene Length | 1224 bp |
|---|
| Protein Length | 407 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640931031 |
|---|
| Product | putative multidrug resistance efflux pump |
|---|
| Protein accession | YP_001471946 |
|---|
| Protein GI | 157373346 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTTGAAG GTTTAGCCGT ATGGGCGTTA TTTATCTATC TGCTCCGCTT AGTCGGTATG
CCGTGGAACA AATTCAGTAA AGGTTTTGCC TACATTGGTG GCGGCGGTTG GTTGCTGTTT
GTGTGGGTTG GGCTGTTGAA CTTTACACCC ATGGATCTAT CCGGCGGGTC CTTGGTGCAG
TCACCGCATA TTCAACTCAG ACCGGCTTCG AGTCAAATCA AAGGCCAGGT GAAACAGATC
TATGTTCAGC CAAACCAGAA GATTGAGGCT GGGCAGTTAA TCTATGAACT CGATGATGAG
ACCTATCAGA TAGCACTCAA TAAGGCACTG GTTGCTAAAG AGTCTGCCAA TGTTTCTCTT
TCTGTGGCTA AAGAGGATGT GAAGCTGGCT CATAAAGAGT ATCAGACAGC GATAACCGAC
ATCGAGATAG TCAAAAACCA GTTAGCAGCA GCAACAAAAG ATCTTCTTTG GAAACAGAAG
ACGCTGGCAA GGTATACCGA ACAGAATCGC GTCGTTCCAA ATACCATTAC GGCGAGCCAA
ATGGATGAAC AGACCAATGG CATCGATCTG GCCGAGGCCA ATGTTCATAC ATATGGCTCC
CAAATTGATA AGGCAAGTTT GGCCGAGCAT AAGGCTAAAC TGAATATTGA AAAAGCGGAG
TTAGCGGTAA AGAGCGGTGA GTCAGACTAT AGCAGCGAGG TAGAAAACGT TGCTCAGGCT
CAATGGAACT TAGATAACAC TAAGGTCTAC GCTCCGGCAG ATGGCTACCT GACTAACTAT
ATTATGCGAG AGGGGCAGTT TGTAGGCCTG GTACCACGCA TTCAGATGTA TACCAATGAA
AAGTATGTGC TGATGCGGGT CAACCATCAG GCTATTCGTA ACGTTAAGGT AGGTCAGAAT
GCGGAGTTTG CATCGGCGGT CTACCCGGGA AAGGTGTTTA ATGCTGAGGT TGAGGGGATT
ATCGAAGCCA CGGGAGAGTC TCAGGGAAGT TTGTTTGCCC GTGATGATAA CGTACGTCAG
ACAACCGGGC AGAACCTGAA TAATAAGCAC CACTTTGTGC GACTGAAATT AAATGAAACT
GAGGATTATG ATATTCCGGT TGGCTCGGTC GGATTGGCGT GGATCTCTGG TGAGAAACCT
GTCTCTTTTC TCGCATTTCT GGACGTGATT AGAGGGATCA TCATCAGAAT GAAGTCGCAA
ATCTATTACT TCTATTCTAT TTGA
|
|---|
| Protein sequence | MLEGLAVWAL FIYLLRLVGM PWNKFSKGFA YIGGGGWLLF VWVGLLNFTP MDLSGGSLVQ
SPHIQLRPAS SQIKGQVKQI YVQPNQKIEA GQLIYELDDE TYQIALNKAL VAKESANVSL
SVAKEDVKLA HKEYQTAITD IEIVKNQLAA ATKDLLWKQK TLARYTEQNR VVPNTITASQ
MDEQTNGIDL AEANVHTYGS QIDKASLAEH KAKLNIEKAE LAVKSGESDY SSEVENVAQA
QWNLDNTKVY APADGYLTNY IMREGQFVGL VPRIQMYTNE KYVLMRVNHQ AIRNVKVGQN
AEFASAVYPG KVFNAEVEGI IEATGESQGS LFARDDNVRQ TTGQNLNNKH HFVRLKLNET
EDYDIPVGSV GLAWISGEKP VSFLAFLDVI RGIIIRMKSQ IYYFYSI
|
|---|
| |