| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0130 |
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| Symbol | |
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| ID | 5612345 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 144687 |
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| End bp | 145931 |
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| Gene Length | 1245 bp |
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| Protein Length | 414 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640930956 |
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| Product | isochorismate synthase |
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| Protein accession | YP_001471871 |
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| Protein GI | 157373271 |
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| COG category | [H] Coenzyme transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG1169] Isochorismate synthase |
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| TIGRFAM ID | [TIGR00543] isochorismate synthases |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0000366524 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 52 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTGCGA TTGCCTGGCT TGCCGCACAG CCGATCTACC CCAGAATTTA CTGGAAAGGC
AGAGATACCG AAGAGGAAGT TGCTGCCGTC GGAAGCTGCA AAGATTTCGC CTATGAAGAG
GCGGTAGATG ACAACCAGCT ATCCTTGGAA TATCAGAAAC AACGCGCCCT CTCAAACAAT
CAGGATATTC GCTATTATGG CGGCGTTGCT TTCGACAGAA CCACTGAATG CTGGCCCGAG
TTTGGCAGAG CCCACTTTGT TCTTCCCAGA ATAGAGTTAA GACGCAGTGG TGAAGAGTAT
AAATTACTGA TCAACCTTAA TTGCGAGTCT AATGATACTG AAACTGAGCG AACCAAAGCG
ATAGAAGACT TGGCAAAACT GGTTTTCCCA AGTCCACTCT CCCCACCAAA TAAAATCAAC
TTATTAAGCA GAAGTGATAG GCCAGACCAT TATCATTGGA CCGAATTGGT AAAGAAAGTC
ACTCACGAGA AGTTTATACA GGATACCCCA AAAGTCGTGC TGTCGCGTCT GACTCAACTG
GAGGTAGACG AAGAGGTCGA CCCCTGGACG CTACTCGCTT GTTGGCAGGG ACGTAATCAA
AATAGTTTTC AATTTGGATT CCAGTTTAGC CCCGAACGTG CTTTTATCTC CTGCACGCCA
GAGCGCCTCT ATCGACGTAG ACAACGAGAA CTATTTACCG AAGCATTGGC GGGCACAACA
ACACGTGGGT TAAACCAGGA AGAAGACAGA GTTCTTGCTC AACAGCTATT AGAGGACAGT
AAAAATAGCC ATGAAAATCA GCTCGTAAAA GAGCATATCG TTGATGCCTT AACTCCTTTA
AGTAACTATG TTGGCGCGGA AGAGACGCCT CGGGTATTTA AACTCAGCCA TATTCAACAT
CTACACCGTT CAATTAGGGC TGAGTTGAAA CCTGGTATCG ATGACTTTCA GTTATTACAG
GCGCTCCATC CGACACCTGC CGTGGGCGGC TTACCAAAAG AACCCGCAAT GAGCTTTATC
CGCCAACGTG AAGGCTACGC CAGAGGCTGG TATGCCGGAG CCTGTGGATA TTTCAATAAA
TATGAAAGTG AGTTTGCCGT CGCTATCCGC AGTGCACTCA TAGAGCCCGG ACGGATCAAC
TTATTCGCCG GAGCCGGTAT TGTTTCAGGT TCAGAGCCGG AAGCCGAATG GGTTGAATTA
GAGAATAAGC TGACAACGAT ACTTTCTATC CTTACTGAAC TTTAG
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| Protein sequence | MPAIAWLAAQ PIYPRIYWKG RDTEEEVAAV GSCKDFAYEE AVDDNQLSLE YQKQRALSNN
QDIRYYGGVA FDRTTECWPE FGRAHFVLPR IELRRSGEEY KLLINLNCES NDTETERTKA
IEDLAKLVFP SPLSPPNKIN LLSRSDRPDH YHWTELVKKV THEKFIQDTP KVVLSRLTQL
EVDEEVDPWT LLACWQGRNQ NSFQFGFQFS PERAFISCTP ERLYRRRQRE LFTEALAGTT
TRGLNQEEDR VLAQQLLEDS KNSHENQLVK EHIVDALTPL SNYVGAEETP RVFKLSHIQH
LHRSIRAELK PGIDDFQLLQ ALHPTPAVGG LPKEPAMSFI RQREGYARGW YAGACGYFNK
YESEFAVAIR SALIEPGRIN LFAGAGIVSG SEPEAEWVEL ENKLTTILSI LTEL
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