| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0111 |
|---|
| Symbol | |
|---|
| ID | 5612858 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 125110 |
|---|
| End bp | 125868 |
|---|
| Gene Length | 759 bp |
|---|
| Protein Length | 252 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 640930937 |
|---|
| Product | glycosyl transferase family protein |
|---|
| Protein accession | YP_001471852 |
|---|
| Protein GI | 157373252 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3306] Glycosyltransferase involved in LPS biosynthesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTTCA AAGTTTATAT CATTAATTTA GATTCCAGCG TCGACCGATG GGAACAGCTC
TCGAGTCAGT GTGACCAGAT GGGCATTGAG TATGAGCGGG TTTCAGCCGT GAGAGGCAGT
GAACTGACGG AGCAAGAAAG GGCAAAGGTT TACGACCTGC CAACCAACCT GGAAAAGTAT
GATAAGAGAC TCAATGATGG CGAGATAGGT TGCTATTTGA GTCATATTAA ATGCTGGGAA
AAGATTATTG AAGAAGAGCT GGATTTTGCT CTTATTCTTG AAGATGATGT TTCTTTGCGA
GAGAACATTA AGGAGTGCAT TGCACAATTT TTCTCAATGG ACTCATCTGA CTGGGATTAT
ATCAAGCTGT TTCACCGTAA ACGATTGAAA ATGAAGGTGG CATCGCTAAA TTTAGATGAG
GGAGTGCAGT TGCATAAAGT AGCAAAACTC CCAGCGAGTA CCTGTTCTCA ATTTGTGTCT
CAGGTGGGGG CTAAAAAACT ACTTAAGCAT AGTTTTCCAA TTGCTCGTCC GGTCGATGTA
GATATTCAAT ATTGGTTTGA ACGAGAGTTG CGTTGTTTTG TTGTCAGCCC TCCAGTTGCT
GTTCCGGCAG GCTTTGATAG TGAAATAGAT ATAATTGGCC AGCACAGGGA CTATGTTCAA
CGTCGGGCAT TTAAGCGCAT CTGGTTGCGG GTTATTTACG AGATAAACGT GTTGTTAAAT
ACGTTTAAAT TGTCACCATT CCCCAAAATG AAAGGCTAA
|
|---|
| Protein sequence | MKFKVYIINL DSSVDRWEQL SSQCDQMGIE YERVSAVRGS ELTEQERAKV YDLPTNLEKY
DKRLNDGEIG CYLSHIKCWE KIIEEELDFA LILEDDVSLR ENIKECIAQF FSMDSSDWDY
IKLFHRKRLK MKVASLNLDE GVQLHKVAKL PASTCSQFVS QVGAKKLLKH SFPIARPVDV
DIQYWFEREL RCFVVSPPVA VPAGFDSEID IIGQHRDYVQ RRAFKRIWLR VIYEINVLLN
TFKLSPFPKM KG
|
|---|
| |