Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0105 |
Symbol | |
ID | 5612685 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 119268 |
End bp | 119990 |
Gene Length | 723 bp |
Protein Length | 240 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640930931 |
Product | 3-deoxy-D-manno-octulosonic-acid kinase |
Protein accession | YP_001471846 |
Protein GI | 157373246 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG0478] RIO-like serine/threonine protein kinase fused to N-terminal HTH domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 34 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAGATTA AACAAACCTC ATCAGGCGCT ATCGCATATT GCGATGCCAC GCCTGAAACC ATCTCAGTGC CGTGGTTTAC CTTCGATTAC TGGCAGAGCC AAGGTGCTAT AACAGGTTCA TCAAAGGGCC GATACACCAC CTGGTTTGTT AAACCCAATA TGGCTGAGAC AGACAAGAGT GAATGGGTGC TGCGCCACTA CTATCGCGGT GGGCTGATGG AAAAGATCAG CAAGGACTCC TATTTTTACA CCGGTCTGAA AAACACCAGA GCGGTGGCTG AGTTATCACT ATTAGAATTG CTGTATAGCG AAGGATTTGA AGTCCCCCGC CCCATCGCCG CCAACGTAGA GAGAAACGGT CTCTATTATC GCGCCGATAT CATTATCGAA CGCGTGGAGG GGGCCCAAGA TCTGGTGGCC CAACTGAGCA AGTCGCCGAT GTCAGATCTA CAATGGCAGC AACTAGGTGC CTGTATCGCT AAATTCCACC AGCGAGGGGT CTATCATGCC GATCTCAACG CCAAGAATAT CCTTATCACA CCAGATAAAT TCTACCTTAT CGACTTCGAC AGAGGTGAAA TTCGCACGCC AAACCCCAAG TGGCAAGGTG CCAACCTGGA GAGGTTGTTA CGCTCCTTCA GGAAGGAGCT GGCTAAGCTA CCAACTTTAG CCTTCAATGA GACCAATTGG CAAAGTTTGA TGCAGGGATA TTCTAACCCT TAG
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Protein sequence | MQIKQTSSGA IAYCDATPET ISVPWFTFDY WQSQGAITGS SKGRYTTWFV KPNMAETDKS EWVLRHYYRG GLMEKISKDS YFYTGLKNTR AVAELSLLEL LYSEGFEVPR PIAANVERNG LYYRADIIIE RVEGAQDLVA QLSKSPMSDL QWQQLGACIA KFHQRGVYHA DLNAKNILIT PDKFYLIDFD RGEIRTPNPK WQGANLERLL RSFRKELAKL PTLAFNETNW QSLMQGYSNP
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