Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0081 |
Symbol | |
ID | 5613447 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 90188 |
End bp | 91054 |
Gene Length | 867 bp |
Protein Length | 288 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640930907 |
Product | hypothetical protein |
Protein accession | YP_001471822 |
Protein GI | 157373222 |
COG category | [N] Cell motility |
COG ID | [COG1868] Flagellar motor switch protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAACAA CGGCGAAAGC ATGTTTACTT AAAGCTTCTC GGTGTGAGCG GGTTAGACCT GTTGCATTAA TTCAGGAGAA GTTAGCCCGT AGTCGGTTAT TGATTCAAGT TGATGCTTGT CAGCGCTCCT TTCTTGAGGC GGCTAATGGG GTGCTCAACC CCATTATCAG ACAGGGTCAT CATGCGTTAT CGAGTATTTC ATTGACCGAC AGTGATCAGT CCGTGGTACC CGATATCAAT AATGGCTGGT TTCTACTTCG TTATCAGCGG CTGCCTTTGG CGTGGTGGCG AATCGATAAA TGTACTCTGG ACCAATTGGC TAGTGGCTAT TATGGAAGTC TGGCGACTCT CTTGAAGTCT CCTTTGCGAG CCCCCAGCCA ATCGGAGTTT AGATTGGCAA AAAAATTGAT GCTTGCCGCG CTCAAGGTTC TGCCTACAGC AGAGCTTGAT GAAAATGCAT TAGAGCTGGA GTTGGTGGTC AATAGTACGC CTATCGATTC ACCTGTGATT TGGGAGATAG CTTTTCCGGT AGAGCATAAG GTGGCTCCTA TGTTGTTTTG TATGACTGAA CACCTACTGG GATTAATGTC TGAGCAGCCT AGCCAATACA TGGCAACACC TGATTTAGCC GAAAAGCTCT CATATCGCCT GAGGCAGATC CCCATAAAGA TATTGTTTGA ACTTGGTCGT CAAAGCACGC CGGTGACTTC ACTTCATGGC CTTGAAGTTG GTGACATATT ACCCATGAAT TTACATTCTC GCTGCCCGGT AACAGTGGGA AAGCGACCTC TTTTTTACGC TGCAATTCAT ACCCATGATG GCCAGATGGT TGCCAAATTA GCCCAGGATA TTTATCAGCA AGGATAG
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Protein sequence | MKTTAKACLL KASRCERVRP VALIQEKLAR SRLLIQVDAC QRSFLEAANG VLNPIIRQGH HALSSISLTD SDQSVVPDIN NGWFLLRYQR LPLAWWRIDK CTLDQLASGY YGSLATLLKS PLRAPSQSEF RLAKKLMLAA LKVLPTAELD ENALELELVV NSTPIDSPVI WEIAFPVEHK VAPMLFCMTE HLLGLMSEQP SQYMATPDLA EKLSYRLRQI PIKILFELGR QSTPVTSLHG LEVGDILPMN LHSRCPVTVG KRPLFYAAIH THDGQMVAKL AQDIYQQG
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