Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sputcn32_3997 |
Symbol | |
ID | 5081506 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella putrefaciens CN-32 |
Kingdom | Bacteria |
Replicon accession | NC_009438 |
Strand | - |
Start bp | 4650832 |
End bp | 4652115 |
Gene Length | 1284 bp |
Protein Length | 427 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640501209 |
Product | outer membrane efflux protein |
Protein accession | YP_001185499 |
Protein GI | 146295075 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAGCTA TTCTTTGTAA ACGCACAGCC AAAAAACCGA TAGGCAATCG GTTTTCTGCT GCATTGATAG GAATGAGTAT TATCCTATCG GCATCCGCAG CGACAGATGA AAGCCCGCAA AAAATCAGTT TATCTGATGC GGTTACCATG ACTCTCACCC ATCATCCTGA TTTACAAGCT TTTGTATCGC AGCAGCGAGT CTGGGAGGGG CGTATTCAGC AAGCGAGTGT CGGTGAACGC CCAGAAATTG GGCTGATGAT TGAGGATGCG TTAGGCACAG GGGAACACAG TGCATTGAAA AGTATGCAAT CTACGCTCAC CTTCTCATGG TTGCTGCAAC AGGATTTAAT TGATAGTCGT GTTAACACGG CAAAAACAGA AGCCACTAAA CTGGCCATAG AGAAGCAAAT CAAGGCGCTC GATTTGTCTT CACAGGTGGC TAAGCACTTT ATCGATATAC TGGTTAAACA GGAGCGCCTT AAGCTCAATG TGATGGCAAA GGCTCAGGCT GAGAACGTTG TTGGTACGAT TGCCAAGCGG GTGCAAGTAG GTAAAAGTTC GGCGGTTGAA ATGCAGTTGG CAAAGGCTGA ATTTATCCGC CGAGGACTGG CGGTCGAAGA TATCGAACAC GAGCTGCAAG CGAGCCAGTA TCAACTAGCC TCTTTTTGGG GAAAGCCTCA AGCATCATAT TATTTCAACG GTGATCTGCT GGACATGCCA ACTGTGCCGT CGGTTGACAG TCAGCTTACC CTGCTAAAGC AGAATCCGCG TTTTCAACAG TTTGCCAGTG CTCAGCGTAT TGCTCAGTCA CAAATGGAAC TGGCACGAAT TGAAGCCAAA CCCCAGTGGC AATTTACCGC TGGGGTCCGT CGTTATGAGG CAAGCGATGA CTTTGGTTTA GTGGCAGGCG TCTCTATCCC TTGGGGCACA AGTGACCGTA ATGCAGGGAC AATCGCAGCC CTCCACGCTC AGCAGGATGT GTTGGCCAAC GAACAAAGCG CATTAATGCA AGCTCAAGAT GCTCAACTCT ATGTACTGCT ACAGGAAATG GCACACTCTG CGCATGTGAT AGATACAGTG CGCAACAGCA TAGTGCCCAC CCTCGAAAAA GCCCTGTCAG AGGCAAGTAA TGCTTTTGAT AAAGGTCAAC TCAGTTATAA CCAATTTAAT GATGTGTATC GGGAATTACT CAGTGCTCAA TATCAGTTGC TGGATGCCTT TGAAAGCTTG CATTTACAAC ACATCGAAAT TCAACGCCTG ACGGGTACGT CCATTTCTCA GTGA
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Protein sequence | MKAILCKRTA KKPIGNRFSA ALIGMSIILS ASAATDESPQ KISLSDAVTM TLTHHPDLQA FVSQQRVWEG RIQQASVGER PEIGLMIEDA LGTGEHSALK SMQSTLTFSW LLQQDLIDSR VNTAKTEATK LAIEKQIKAL DLSSQVAKHF IDILVKQERL KLNVMAKAQA ENVVGTIAKR VQVGKSSAVE MQLAKAEFIR RGLAVEDIEH ELQASQYQLA SFWGKPQASY YFNGDLLDMP TVPSVDSQLT LLKQNPRFQQ FASAQRIAQS QMELARIEAK PQWQFTAGVR RYEASDDFGL VAGVSIPWGT SDRNAGTIAA LHAQQDVLAN EQSALMQAQD AQLYVLLQEM AHSAHVIDTV RNSIVPTLEK ALSEASNAFD KGQLSYNQFN DVYRELLSAQ YQLLDAFESL HLQHIEIQRL TGTSISQ
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