| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_3593 |
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| Symbol | |
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| ID | 5078829 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | + |
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| Start bp | 4184625 |
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| End bp | 4186007 |
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| Gene Length | 1383 bp |
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| Protein Length | 460 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640500795 |
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| Product | HlyD family type I secretion membrane fusion protein |
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| Protein accession | YP_001185100 |
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| Protein GI | 146294676 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTAAAC ACTTAACGGC TAATGATCTG GACATGGTAG ATGATGTCTA TGGTGCCATG
ATGACCGATG CACCCACAGG CCACAGATTA ATTATTTGGG CAATGGCGGC AATGATTGTC
TGTTTCTTGT TGTGGGCAGC TTTTGCCAAA TTAGACAAAG TCACCACAGG CTCAGGCAAG
GTAATCCCCT CCTCACAGGT TCAGGTTATT CAAAGCTTGG ATGGCGGAAT AATGCAAGAG
CTCTACGTAC GGGAAGGTGA ACTGGTCACC AAAGGGCAAC CCTTAGTACG AATTGATGAC
ACTCGTTTCC GCTCAGATTT CGCTCAACAA GAGCAGGAAG TTTTTGGTTT AAAAACCAAC
GCTATTCGTA TGCGAGCCGA GCTAGATAGC ATATTAATCT CAGATATGAC CTCTGATTGG
CGTGAACAGG TTTTAATCAC CAAAAAAGCC TTAGTTTTCC CTGATAGTAT AGTGGCGGCG
GAGCCTGCAC TCGTGCATAG GCAACAAGAG GAATACAACG GTCGTTTAGA TAATCTCAGT
AATCAACTTG AGATATTAGT GCGCCAAATT CAACAAAGGC AGCAGGAAAT CGATGAGCTT
GCCTCAAAAA CGACAACGCT CACCACAAGT ATGCAGTTAA TCTCCAGAGA ACTAGAACTG
ACTCGACCTC TCGCTAAAAA GGGGATTGTG CCAGAAGTCG AATTGCTCAA GTTAGAGCGT
GCGGTTAACG ATGCTCAAGG TGAACTCAAC TCACTACGAT TACTTAGACC AAAATTGAAA
TCAGCCCTAG ACGAAGCCAT TTTAAAACGT CGGGAAGCTG TATTTGTGTA TGCCGCCGAT
TTGCGGGCGC AGCTTAACGA GACCCAAACT CGCTTATCTC GTATGAATGA AGCTCAGGTT
GGCGCACAAG ATAAAGTCAG TAAAGCCATT ATCACCTCAC CTGTTAACGG CACCATTAAA
ACAACACATA TCAATACATT AGGTGGCGTT GTACAACCTG GTGTAAACAT TATTGAAATT
GTTCCTTCCG AGGACCAATT ATTGATAGAA ACCAAAGTAC TACCAAAAGA CATTGCTTTT
TTACATCCAG GATTACCTGC GATTGTTAAA GTCACCGCCT ATGATTTCAC TCGTTATGGC
GGCCTTAAAG GTACTGTCGA ACATATCAGT GCAGATACAT CGCAGGATGA AGAGGGCAAT
AGCTTCTATC TTATTAGGGT GAGAACAGAA GAATCGAGTT TAGTTAAAGA CGATGGCACG
CAGATGCCAA TAATTCCGGG GATGTTAACT ACGGTTGATG TCATCACGGG ACAAAGATCC
ATTCTTGAGT ACATTTTAAA TCCAATTTTA AGGGCTAAGG ACACTGCGCT TAGAGAGCGT
TAA
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| Protein sequence | MSKHLTANDL DMVDDVYGAM MTDAPTGHRL IIWAMAAMIV CFLLWAAFAK LDKVTTGSGK
VIPSSQVQVI QSLDGGIMQE LYVREGELVT KGQPLVRIDD TRFRSDFAQQ EQEVFGLKTN
AIRMRAELDS ILISDMTSDW REQVLITKKA LVFPDSIVAA EPALVHRQQE EYNGRLDNLS
NQLEILVRQI QQRQQEIDEL ASKTTTLTTS MQLISRELEL TRPLAKKGIV PEVELLKLER
AVNDAQGELN SLRLLRPKLK SALDEAILKR REAVFVYAAD LRAQLNETQT RLSRMNEAQV
GAQDKVSKAI ITSPVNGTIK TTHINTLGGV VQPGVNIIEI VPSEDQLLIE TKVLPKDIAF
LHPGLPAIVK VTAYDFTRYG GLKGTVEHIS ADTSQDEEGN SFYLIRVRTE ESSLVKDDGT
QMPIIPGMLT TVDVITGQRS ILEYILNPIL RAKDTALRER
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