| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_2134 |
|---|
| Symbol | |
|---|
| ID | 5080010 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | + |
|---|
| Start bp | 2450353 |
|---|
| End bp | 2451717 |
|---|
| Gene Length | 1365 bp |
|---|
| Protein Length | 454 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640499296 |
|---|
| Product | GntR family transcriptional regulator |
|---|
| Protein accession | YP_001183654 |
|---|
| Protein GI | 146293230 |
|---|
| COG category | [E] Amino acid transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTACAA TTTGGATGCC AGACCTAAGT GCTTTTTCAG GTCCAAAATA CCAACGCTTA
GTCAGTGCAA TTGAACAAGA TATTTTAAAT GAGCAACTGC CCCATGGCCG TAAACTCCCA
CCACAGAGGC GTTTAGCCGA TGCACTAGGT GTCACGATAG GGACAGTTAC GCGTGCCTAT
GCCCTTGCTG AGCAGCGGGG ATATGTTGAA GCCCGCATTG GCGATGGCAC CTATGTCAGC
GGTTCCCCAT CTCCAGTAGC AGAATTAACG AATGTGCCAC TCAATATGGC AACCTGCCAA
CAACCTCTCA CCGATCAAAT GAGCACATTA AGCGACTGCC TTAGCCAACT CGCGAAAGAT
CCCAGAAAAT TGAGTCAATT GATGGGTTAT AGAGCAAGCC CGTTAGATCA ACACCAACAA
GTGTTCCATC AATGGTTATC CCAACGAGGC ATAGAACAAA AGCCTGAACA ATTGATCTTT
AGTCACGGGG GGCAACAGGC CATTTTTGCC TGCCTGAGTG CATTTTTATC TAAGGGTGAT
GTGCTATTGC ACGAACAATA CAGTTATCCC GGTGTACGCA TTTGCGCTAA ACAATTGGGT
ATTACCAGCA TCGGAGTCCC ACTGACGGAT GAAGGGGTTG ATCTCGCTCG ATTTGAAGCA
TTAGTGCAGT TGCATAATCC TAAACTGGTT TATTTGACCT TGAATAACCA AAATCCAACC
TGTATCCAAT ACAGTCATGA GCAAAGGTTA AAATTACTTG AACTTTCTGA ATTATATGAA
TTTTATATTA TTGAGGATGA TGTCAATTAT TGTTTGCCAG AGGAATGGCA TATACCGCTA
TGGCAATTAG CACAGCAAAA AGCCGTTCCT CGAGTGATCT ATATTTCCAG TCTTTCTAAA
CTTTTTTCTG GCGGTTTAAG GCAAGGTTTT ATCTTAGTAC CGGAAGCACT CATCGCCCCA
GTTCGCTTGG CTATTCACAG CCAATGCTGG ATGGTATCAC CGCTCAATGT GGAAATAGCC
TGCCAAATCA TCAAAAAAGG AAACATCACA GCAACCCGGG ATGCCATAGT ACGCCAACGC
CAAAGCCAAT GTATTGCTAT GGGTGAACGC TTAGGTTTAA AACAGCGCTG GCGCGGCTTA
AATGGCTGGT TGCAATTACC CGAGGATATT AAAGCACATC ACTTAGTCAC GGCTTTAGCA
GCCAAAGGCG TACTCATTCG TAACGGTGAT GATTTTAATT GTCACGATAA TTTTATCCGC
TTAAGTCTTG GTGGCGCGGA CAATGATGCG CAATTCAATC TCGCCGTTGA ATGTATAGAA
GCGACCATAC ATTCCTTGGT GCAAAATGCC TACTCTGTGG TTTGA
|
|---|
| Protein sequence | MSTIWMPDLS AFSGPKYQRL VSAIEQDILN EQLPHGRKLP PQRRLADALG VTIGTVTRAY
ALAEQRGYVE ARIGDGTYVS GSPSPVAELT NVPLNMATCQ QPLTDQMSTL SDCLSQLAKD
PRKLSQLMGY RASPLDQHQQ VFHQWLSQRG IEQKPEQLIF SHGGQQAIFA CLSAFLSKGD
VLLHEQYSYP GVRICAKQLG ITSIGVPLTD EGVDLARFEA LVQLHNPKLV YLTLNNQNPT
CIQYSHEQRL KLLELSELYE FYIIEDDVNY CLPEEWHIPL WQLAQQKAVP RVIYISSLSK
LFSGGLRQGF ILVPEALIAP VRLAIHSQCW MVSPLNVEIA CQIIKKGNIT ATRDAIVRQR
QSQCIAMGER LGLKQRWRGL NGWLQLPEDI KAHHLVTALA AKGVLIRNGD DFNCHDNFIR
LSLGGADNDA QFNLAVECIE ATIHSLVQNA YSVV
|
|---|
| |