Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sputcn32_2021 |
Symbol | |
ID | 5078224 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella putrefaciens CN-32 |
Kingdom | Bacteria |
Replicon accession | NC_009438 |
Strand | + |
Start bp | 2304378 |
End bp | 2305757 |
Gene Length | 1380 bp |
Protein Length | 459 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640499181 |
Product | MATE efflux family protein |
Protein accession | YP_001183541 |
Protein GI | 146293117 |
COG category | [V] Defense mechanisms |
COG ID | [COG0534] Na+-driven multidrug efflux pump |
TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.068877 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAACATT CAGGCTTCCA AGCCAAACGC TTAATCCAAC TTGCACTGCC AGTGTTCATC GCCCAAGTCA CCCAGACAAT GATGGGATTT ATCGATACTG TTATGGCGGG ACGAGTCAGT GCCGTTGATA TGGCGGCTGT GGCCGTAGGA ACCAGCCTTT GGCTGCCCGC TATTTTATTT GTTCAAGGTT TACTGATGGC TTTTACCCCC TTATTTGCCC ATTTTAATGG TGCAAATAAT CAAAAAGCGA TTCAACCTTT AGCCTTTCAA GGGGCCTATC TTGCCATCAT TGGCGGCATT GGGGTGATGA TTTTCCTCGC ATCGGCACCT TTTGTACTTG GCCATATGGA CTTAGAACCT GAATTGTACC GCTTAACCAT AGGTTATATC GACGGTATTT TATGGGGCGC ACCGGCATTT GTGTTATATC AAGTATTAAG AGGCTGTAGC GAAGGGATCT CATACACTTT ACCGACAATG GTTATTGGGT TTGTCGGATT AGCCGTCAAT ATCCCTGCCA ATTACATTTT TATTTATGGT CACTTTGGCG TTCCTGCAAT GGGCGGTGCG GGTTGCGGGG TTGCAACGGC CTTGGTTTTT TGGGCAATGC TGATTGCAAT GACTATTTAT ATGCAATTTC ACCGCAAATT TGCCGCACTT GCTCCTTTCA GTAAATTTCA TCGACCAGAG TTTAAAACGA TGAAAAAAAT GACGAAGCTC GGCATGCCAA TAGCTATGGC GCTGTTTTTT GAAGTGAGTT TATTTGCAAT CATTGCATTG CTTCTGGCGC CTTTAGGTGC CACTGTTGTA GCTAGTCACC AAATTGCCCT CAACTTCTCC GCAATTGTTT TTATGCTGCC TTTATCTATT GGTATCGCAG TTTCGATCAG AATTGGTTAT TACTTAGGCC GAGATCGTAG CGATATTTCT GCCGTTGTGG CAAAAGTGGG GTTATGGCTA GCGCTGTCTC TCGCTCTTTC CACTGCGGTG TTAACGGTAC TATTTAGATT CCAGATTGCT GAACTCTATA ACAATGACCC GGATGTCGTT GTGTTAGCTG GTAGTTTGAT GTTGATGGCC GCGCTATATC AATTATCGGA TTCAGTCCAA GTTGTTGCGG CGGGCGCCCT ACGGGGCTAT AAAGATACTC GTAGTGCTTT TTATATCACG CTCTTCTCCT ACTGGGGGAT TGGCATGACA CTAGGCTATA CCTTGGCTTA TACGGATTAT ATTGTGCCAG CTATGGGCGC CCACGGATTT TGGACTGGAC TTATCGCAGG ACTGACCTCG GCAGCGCTGC TGTTTTTTAT ACGCTTACGC TATATCCAAA AGCATGGAGT ACATTTAAGC CTTATTGAAG GTGATAGCGC ACACCATTAA
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Protein sequence | MKHSGFQAKR LIQLALPVFI AQVTQTMMGF IDTVMAGRVS AVDMAAVAVG TSLWLPAILF VQGLLMAFTP LFAHFNGANN QKAIQPLAFQ GAYLAIIGGI GVMIFLASAP FVLGHMDLEP ELYRLTIGYI DGILWGAPAF VLYQVLRGCS EGISYTLPTM VIGFVGLAVN IPANYIFIYG HFGVPAMGGA GCGVATALVF WAMLIAMTIY MQFHRKFAAL APFSKFHRPE FKTMKKMTKL GMPIAMALFF EVSLFAIIAL LLAPLGATVV ASHQIALNFS AIVFMLPLSI GIAVSIRIGY YLGRDRSDIS AVVAKVGLWL ALSLALSTAV LTVLFRFQIA ELYNNDPDVV VLAGSLMLMA ALYQLSDSVQ VVAAGALRGY KDTRSAFYIT LFSYWGIGMT LGYTLAYTDY IVPAMGAHGF WTGLIAGLTS AALLFFIRLR YIQKHGVHLS LIEGDSAHH
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