| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spro_4855 |
|---|
| Symbol | |
|---|
| ID | 5604194 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Serratia proteamaculans 568 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009832 |
|---|
| Strand | + |
|---|
| Start bp | 5375366 |
|---|
| End bp | 5377165 |
|---|
| Gene Length | 1800 bp |
|---|
| Protein Length | 599 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640940428 |
|---|
| Product | strictosidine synthase |
|---|
| Protein accession | YP_001481076 |
|---|
| Protein GI | 157373087 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3386] Gluconolactonase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.000966412 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAAGC GAATTTTAAA TCAGAAGAAG TTTCTGGGCA TTACGACCCT TAATTGGCTT
CGAACGGATC TTGCAAGAGA TGCGTGTTTT GCTTATTGGG GAGGGCCCCA TGCCGATCTG
GTCTCTCGCA ATGGTTTCAT CCGTGATTAT AATCAGCATC ACTTCAACGA TGATGTAGCG
GGTTTATGGC CCTTAACACC TGAAGTGGTA ACGATTATTC CAACCGATAA ACGGATCGAT
GGCGTTTCTG AAATAATTTT AGACTCTATC ATTAAACTCC CCCTGAGCAT TCGCTCTAAT
CGACGTATTT TTAAAGACAA AGAGAATGCC TTCTGTCGCA CAACTTTAAA CATGACGACA
TTAGGTGGAG GAAGGGTTGT TAAAACCGGC GACTATAAAA ATATTTATGC TCGATGCGTT
GTTTTGATTC GTCGAAGGGA GAATGGCTCT CTAAGCGATT TCAAGCGCTT TATTCATAAC
GGCCTTGCTC ATCAACTCGG CCTCAATGCC AATGTCATTG AAGTCCGCAG CCAGGTCTTT
GTGCCATGGT TTAAGGCTTT GTGGAATGCA CCCAGTGCTG CTCATAACGT GGCACCCGAG
TATCAGTACC ATGCATCAAT TGTCATAGGT GCGAATGATA ATGCCGGATT GCTGTCAGCT
CTGGCTCAGG TAGCCAGCCT CAATAGTGAA ATTGCATATC ATTGTTCTGT AATACACGCT
TATTCGGTCG CTAACACGTT GATCAATCGG GTTGACGGGC GGACAACAAT ACCGCAACTC
AAACCTGGTG CGAAACCTCG ATTAGAACCT GTACGACGTG TTCTTTCTCA TCCCCCTGAG
CGTACTTATC AACCCACTGG TACGACTCCA TTCAAAATGC GTGGACTACT AAAAAGTGCA
GTTAAAAGGC CAGAAGACGT TATCTCTGAT ATGGCAGGCA ACATTTATTA CGGAGGAAAA
GGCGGAAAAA TTTATCGGTA TGATCCTGAA ACTGAGAACG AAACCATTAT AGCGGATACG
GCCGGTAGAC CGCTGGGTCT TGAATGGCTG AAATGTGGCT CTCTCTTGGT TTGTGATGCC
CACCGCGGTT TGCTTAAGGT CAGATTAGAC GGCCATATAG AAACATTGGT AGAACGAGTT
CATGGCCTCC CATTACGGTT CTGCTCGAAT GCCACCGCGA GCACTGATGG AACAATTTGG
TTTACTCAAT CGACGAATCG CTATGATTTC GAGCATTACC AAGGGGCAAT GATTGAACAC
AGGGGGTCAG GGCAGCTTCT GCGACGTGAT ACGAATGGAC AGGTTCATGT GCTATTGGAC
GGTCTGCATT TCCCTAATGG CATCACTTTA GATAGTTCGG AGAGATCTGT CATTTTTGCA
GAAACAGATG CCTACCGCTT ACGCAGGCTC TGGGTGAAAG GCCCGAAGGC TGGGTGTCTG
GAGATTTTTG CAGATAATCT GCCGGGTTTC CCTGACAACA TTTCACGCAT GCAAAATGGT
TATTTTTGGG TGGCCATGGT TACGCCACGC AATAAACGCC TGGACCGCAT GGGAACCATG
CCGGGTTTCC TTCGTAAGCT CATTTGGCGC CTTCCAAAAT TTATGCTGCC TAAAACGGCT
CGAACAGTGT GGGCTATGGC CTTTAATGAT GCTGGCGAAG TGTTAGCCGA TATGCAAGGC
AGCGCGGATA ACTTCTTCGC AGCCACTGGA GTGGTGGAAA CAAATGGTCG GCTGTATATG
GCCTCTGTTG AGGCTGACGG TATTGCTGTC CTTGATATTA CGTCGATGCC TAAACGATAG
|
|---|
| Protein sequence | MSKRILNQKK FLGITTLNWL RTDLARDACF AYWGGPHADL VSRNGFIRDY NQHHFNDDVA
GLWPLTPEVV TIIPTDKRID GVSEIILDSI IKLPLSIRSN RRIFKDKENA FCRTTLNMTT
LGGGRVVKTG DYKNIYARCV VLIRRRENGS LSDFKRFIHN GLAHQLGLNA NVIEVRSQVF
VPWFKALWNA PSAAHNVAPE YQYHASIVIG ANDNAGLLSA LAQVASLNSE IAYHCSVIHA
YSVANTLINR VDGRTTIPQL KPGAKPRLEP VRRVLSHPPE RTYQPTGTTP FKMRGLLKSA
VKRPEDVISD MAGNIYYGGK GGKIYRYDPE TENETIIADT AGRPLGLEWL KCGSLLVCDA
HRGLLKVRLD GHIETLVERV HGLPLRFCSN ATASTDGTIW FTQSTNRYDF EHYQGAMIEH
RGSGQLLRRD TNGQVHVLLD GLHFPNGITL DSSERSVIFA ETDAYRLRRL WVKGPKAGCL
EIFADNLPGF PDNISRMQNG YFWVAMVTPR NKRLDRMGTM PGFLRKLIWR LPKFMLPKTA
RTVWAMAFND AGEVLADMQG SADNFFAATG VVETNGRLYM ASVEADGIAV LDITSMPKR
|
|---|
| |