| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_3992 |
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| Symbol | |
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| ID | 5664376 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | - |
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| Start bp | 4850613 |
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| End bp | 4851836 |
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| Gene Length | 1224 bp |
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| Protein Length | 407 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 641238656 |
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| Product | secretion protein HlyD family protein |
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| Protein accession | YP_001503837 |
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| Protein GI | 157963803 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTTGAAG GCTTAGCAGT ATGGGCACTA TTTATCTACC TTCTGCGTCT CGTAGGTATG
CCTTGGAATG CCTACAGTAA AGCATTTGCT TACCTTGGCG GTACTGGCTG GTTGATGTTT
GTCTGGGTGG GTTTACTTAA CTATACCCCG ATGGATCTGT CGGGTGGCTC TTTGGTGCAA
TCACCTCACA TTCAGTTGCG TCCGGCAAAC TCGCAGATCC GAGGTAAGGT AGAGAATATC
TATGTGAAGC CTAACCAGAA GGTCGAGGCT GGGCAGCTGA TCTATGACTT AGATGCCGAG
CCCTATCAAA TCGCACTGAA TAAGGCGTTG GTGGCGCAGG AAACTGCGAA GGTAAACCTG
TCATTGTCTA GAGAAGATGT AAAGCTAGCG CTTAAGCAGC ATGAAGTGGC GATAGCCGAC
GTCAGTATCA CCAAGAATCA GCTAAATGCA GCGTCTAAAG ACCTCGCTTG GAAGCAGAAG
ACATTGGCAC GTTTTGTTGA GCAGAATCGT GTCGTGCCGG ACACTATCAC TAAGAGCCAA
TTAGATGAGC AGCAAACGGC GGTCGATCTG GCTAATGCAC AGGTGCAGAC CTACTCAACT
CAAATTGAGA AGGCGCAGAT GGCCGAGCAT ACGGCGCTGC TGAATATTGA AAAGTCTCGC
TTGGCGGTAG AGAGTCGCCA GTCAGATCTC AATAGCGAAC ATGAAAATGT CGCTCAAGCG
CAATGGAACA TAGACAACAC CAAGATCTAT GCGCCAACCG ATGGTTACGT GACAAACTTT
ATCATGCGTG AAGGCCAGTA TGTTGGCGTG GCGCCACGTA TGCAGATGTA CACTAATGAA
AAGTACGTGT TGATGCGGGT GAACCATCAG GCTATTCGTA ACGTCAAGGT CGGTCAGTTG
GCTGAGTTCG CCTCTGCTGT CTATCCCGGC AAAGTATTTA GCGCTGAAGT CGAGGGTATA
GTCGAGGCGA CAGGAGAGTC ACAGGGGCGT TTAGTCGCCT TAGATGACAA TGTGAGGCAG
ACTACCGGGC AGAACCTCAA TAATAAGCAT CACTTTGTCA GACTTAAACT GACCGAAAGC
GGTGATTACG ACATTCCTGT CGGCTCAGTT GGACTCGCAT GGATCTCTGG CACTAAGCCG
ATAGAGTTCT TAGCGTTCTT AGATGTGATC CGCGGAATTG TCATCCGAAT GAAGTCGCAA
ATCTACTACT TCTACTCTAT TTAG
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| Protein sequence | MLEGLAVWAL FIYLLRLVGM PWNAYSKAFA YLGGTGWLMF VWVGLLNYTP MDLSGGSLVQ
SPHIQLRPAN SQIRGKVENI YVKPNQKVEA GQLIYDLDAE PYQIALNKAL VAQETAKVNL
SLSREDVKLA LKQHEVAIAD VSITKNQLNA ASKDLAWKQK TLARFVEQNR VVPDTITKSQ
LDEQQTAVDL ANAQVQTYST QIEKAQMAEH TALLNIEKSR LAVESRQSDL NSEHENVAQA
QWNIDNTKIY APTDGYVTNF IMREGQYVGV APRMQMYTNE KYVLMRVNHQ AIRNVKVGQL
AEFASAVYPG KVFSAEVEGI VEATGESQGR LVALDDNVRQ TTGQNLNNKH HFVRLKLTES
GDYDIPVGSV GLAWISGTKP IEFLAFLDVI RGIVIRMKSQ IYYFYSI
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