| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_3871 |
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| Symbol | |
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| ID | 5664255 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | - |
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| Start bp | 4715680 |
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| End bp | 4717122 |
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| Gene Length | 1443 bp |
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| Protein Length | 480 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 641238535 |
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| Product | pyridoxal-dependent decarboxylase |
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| Protein accession | YP_001503716 |
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| Protein GI | 157963682 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0076] Glutamate decarboxylase and related PLP-dependent proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCACATC ATTTTAAAGA TTACCGCGGT TCACTTGAGC GTTCTTTAGA GCATGCTGTC
TCGTACCTTG AGTCGCTAGA TGAACGACCT GTCGCTAAAG AGATCACGTC GCAGCAACTA
CGAGATTTAA TTGCGGGTGA AATGCCACAG CAAGCTACAG CGCCAGAGCA GGTTATCGAT
GAAATGGCAT ATGCGCTCGA TGCGGGTCTT GTCGCCTCTG GTGGACCGAG ATTTTTTGGT
TATGCCATCG GCGGGACGTT CCCTGCGGCA TTAGCTGCAG ACTGGCTAGT CAGTGCGTGG
GATCAAAATG TGCCCTACTA CGTGTCGAGC CCAGCAATGG CTGTTGCCGA AGAAACGGCA
GCCGAGTGGA TGGTAGAGTT ACTTGGCTTG ACTAAGGGCT CTGCGGTTGG TTTTACTTCA
GGCGCTCAAG AAGCGATTTA TACCTCGTTA ATCACCGCGC GTAATTCACT GCTAGAAAAT
GCAGGATGGG ATGTGGCCAC TAAAGGCCTG TATGGCGCGC CACAGGTGAA TGTGGTCGTC
AGTGATCAAA TTCACTCAAC CATTAAGCGC GCGCTTTCGA TGATAGGTTT GGGGATTGAA
ACCATAGTTA AGGTGCCGAC TGACGATAAT CTTCGCCTTA TTCCACAAGA GCTTGAGCGG
GTATTAGCCG ACATTAACGG CCCAACACTG GTTTGTGCCC AAGCGGGTTG TATCGATTCA
GGGGCATTCG ATCCTTTCGA TGAGATTGCA GATGCCGTTG CTAATCATGG TAATGCTTGG
CTACATGTGG ATGGCGCAAT CGGTCTGTGG GCCGCTGCGA GCGACAAGCA GAAGCATCTA
TTAAAAGGGA TTGAGCGAGC GGATTCCATC GATACCGACG GCCATAAGTG GTTCAACATG
CCTTATGACT GCGGCATGGT GATAGTGAAA GATCCTGCCA AGATCACCTC GGCAATGGGG
GGCGGAAACA TGGGGGATTA CCTTAATGAT GCGATGGAGA AGCCTGATCG TAACGCGATT
AACTTTGGTA TTGCCGCATC GAGACGTGCC CGTGGCCTGC CTGTATACGC CGCGTTTAAG
TCGCTTGGTA AGCAAGGCAT CGTTGACCAT TTAGATAACT GCTGCGCCTT AGCCAAACGC
ATGGCGGATA TTTTGAGAGA AGTAGAGGGC ATCACAATTC TTAATGATGT GGTATCGAAT
CGATTCTCTG CGCAATTTGG CACAGGTGAT GTCGAGTATC GCAACGAGCT AACAGCCCGT
GTGGTACATA GACTGCAGCA AGAGGGTTAC CTTTACCCCT CTACATCTGG ATACAAGGGC
TTAAAGACCA TGCTGTTTTC AGTGCTGAAT TATCACACAT CGATAGAGGA TATTGATAAT
TCAGCGATGA AAATTATTGA AGCTTTTAAC ACTGAAAAAG CGATATTTGT TAAGCCGGCT
TAA
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| Protein sequence | MSHHFKDYRG SLERSLEHAV SYLESLDERP VAKEITSQQL RDLIAGEMPQ QATAPEQVID
EMAYALDAGL VASGGPRFFG YAIGGTFPAA LAADWLVSAW DQNVPYYVSS PAMAVAEETA
AEWMVELLGL TKGSAVGFTS GAQEAIYTSL ITARNSLLEN AGWDVATKGL YGAPQVNVVV
SDQIHSTIKR ALSMIGLGIE TIVKVPTDDN LRLIPQELER VLADINGPTL VCAQAGCIDS
GAFDPFDEIA DAVANHGNAW LHVDGAIGLW AAASDKQKHL LKGIERADSI DTDGHKWFNM
PYDCGMVIVK DPAKITSAMG GGNMGDYLND AMEKPDRNAI NFGIAASRRA RGLPVYAAFK
SLGKQGIVDH LDNCCALAKR MADILREVEG ITILNDVVSN RFSAQFGTGD VEYRNELTAR
VVHRLQQEGY LYPSTSGYKG LKTMLFSVLN YHTSIEDIDN SAMKIIEAFN TEKAIFVKPA
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