Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Spea_3247 |
Symbol | |
ID | 5663636 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella pealeana ATCC 700345 |
Kingdom | Bacteria |
Replicon accession | NC_009901 |
Strand | - |
Start bp | 3982544 |
End bp | 3984142 |
Gene Length | 1599 bp |
Protein Length | 532 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 641237906 |
Product | BCCT transporter |
Protein accession | YP_001503098 |
Protein GI | 157963064 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1292] Choline-glycine betaine transporter |
TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATTTCA AAAATCTCGA TCATAAGCTG TTTTGGCCTG CTATCTGCTT CACCTTTTTA AGCTTGGCCT TGGCGGTATT TTTTCCTGAA AGCTCTAAAG AGGTCGCCCA TGCGGGCATG AAGTGGGTGA CCAATGATAT TGGCTGGTTT ATCCAATTAG CCGGTTTTGG TGCACTTGTA TTTTTGATGT GGATTGCTTT TAGTCGTTTT GGTCATATCA AGTTAGGTGA CGATAACGAT GCTCCTGAGT TCACCTATGC CACTTATGCG TTTTTGATCT TTACTGCGGG TGTGGGCGCG GCACTTATTT TTTGGGCCGT TGGCGAGCCT ATGTACTACA TGCAGAGCCC ACCTATGTTT ACTGAGGCGG GCAGTGCTGA GGCTTCTCAG TGGCTTATTA CTTACACCTT GTTCCATTGG GGACCGATAG GCTGGGCGAT CTTCTGTTTG CCTGCAGTTC CATATGCTTA TTACCTACAT AAGAAAAAGA AACGTAACCT GCGTCTATCT AACTTACTTG AGGATGTGAT TGGTAAGAAA AATGCCGATG GTCCACTTGG CTATTTCATC AACATTATCG CCATTTTCGG TACCCTAGGC GCCTTCTCAA CTTCAATGGG CTTAGCCGTT GACCTTATCG GTTCGGGCAT TGAGAAAGTC ACCGGTTTAC CAAATGATAT CTGGCTTCAG GTCGGTCTGA TTGTACTGTT TATTGTCTTC TATGCCGTGG TGATGTTGGC CGGTATGAAG AAGGGCGTTG CTAAGCTTGC TAACTGGTGT GTCTATGCCG CGTTCGCTTT AGGTATTTTC ATCTTATTGT CGGGGCCAAC CGCGTTTATT CTGTCTTACT TCTTCGACAG CTTGAGCGTG ATGGTCGATA ACTTCGTGCG CATGAGTTTC TGGAGCGATC CAGTTGAAAA GTCTGGTTTC CCACAGGCGT GGACCATGTA TTACTGGGCT TGGTATTTTG CTTACCTAGT GATGATGGGC ATCTTCTTAG CGCGTATCTC TAAGGGACGT ACGATTAAAG AGTTAGTGTT AACGACGATT TTCTTTGGCT CGGCAGGTTG TGCCTTCTTT ATCGCTATCT TCGGCAGCTA CTCGGTATTT AGTGAGTTAA CGGGTGCACT ACCAGTGCTT GAGTGGATGA ATGAGGCAGG GGTTTCCATG GCCGTGATTG AGGTGATCAA TGCGCTGCCT TTTGGCGCGG CGATTTTGAT TATCTTCCTT ATCGTTGAAT TCTTCTTAAT GTCGACCACT ATGACATCGG CTGCCGTGGC AATCTCGATG ATGACCACCA AAGAGTTGGA TGCGGATGCG GATCCGGATG TTTCGGTAAG ATTGATTTGG GCATTAGGTA TTGGCGCGGT TTCAATGGCG GCCTTCTTTA TGGGGGGCAG TATCGATACG ATTAAGTCCA TGTGTATTAT CGTTGGCTTG CCGATGATTT TCCTAAATAT TTTGATGGTG GTGTGCTTGA TGAAGTGGAT TAGAAAGGAC CACCCAGAAC TGTTCAAATC AACAGTTACA CAGGCTGCAA AAAACAACGC AGAACAGGCT GAGCCTGCTC AAGCTGAATT AGCAAAAGTT GAGGGATAA
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Protein sequence | MNFKNLDHKL FWPAICFTFL SLALAVFFPE SSKEVAHAGM KWVTNDIGWF IQLAGFGALV FLMWIAFSRF GHIKLGDDND APEFTYATYA FLIFTAGVGA ALIFWAVGEP MYYMQSPPMF TEAGSAEASQ WLITYTLFHW GPIGWAIFCL PAVPYAYYLH KKKKRNLRLS NLLEDVIGKK NADGPLGYFI NIIAIFGTLG AFSTSMGLAV DLIGSGIEKV TGLPNDIWLQ VGLIVLFIVF YAVVMLAGMK KGVAKLANWC VYAAFALGIF ILLSGPTAFI LSYFFDSLSV MVDNFVRMSF WSDPVEKSGF PQAWTMYYWA WYFAYLVMMG IFLARISKGR TIKELVLTTI FFGSAGCAFF IAIFGSYSVF SELTGALPVL EWMNEAGVSM AVIEVINALP FGAAILIIFL IVEFFLMSTT MTSAAVAISM MTTKELDADA DPDVSVRLIW ALGIGAVSMA AFFMGGSIDT IKSMCIIVGL PMIFLNILMV VCLMKWIRKD HPELFKSTVT QAAKNNAEQA EPAQAELAKV EG
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