| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_2472 |
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| Symbol | |
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| ID | 5662865 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 3016457 |
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| End bp | 3019057 |
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| Gene Length | 2601 bp |
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| Protein Length | 866 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 641237098 |
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| Product | putative PAS/PAC sensor protein |
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| Protein accession | YP_001502327 |
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| Protein GI | 157962293 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5002] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.451981 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTAAAC CCAATAGACA ATATTCAAAA TTAACCGACT GGCGCTCAAA TTTACCGATG
CAGTTTATGT TGGTTCAACT GCTCGTCGCC GCTGTTATCA TCATCACCAG CGTATGGTTT
CTCAAAACCA TTGAAACAGA ACGTTTAATT GATAACCAAG AGTTTTTGAG TATCAATCAG
GGCAAAACCA TCGTTGCTAA ACTGCAGCAA AAAACCAATA AAATTGAAAA CCTAGCCGTA
TCAATTGGTG CATTGGGCGA ACTGTACCAA CATAGCCCTC AAGAGTTAAA AACTGCAATA
CCAGCGCTAT TAGATCAGCC TGGGCAACAA GAAGTCATAC TCGGCGGTGG AGTATGGCCC
GAGCCGTTTT TATTTGCTCC TAACAATCAA AAAGACAGTT TCTTTTGGGC ACGAAATTTT
GCCGATGAGC TGATTGCAGT CAACGACTAT AACGCAGAAG GTATATCGCC CTACTACCAA
GAAGATTGGT ACGTTCCCGC AAAGTTCTAC CCAACGGATA CGACCTACTG GTCTAAGTCC
TATATTGACC CTTTTACCCA AAAAGCAATG CTGACAGCAT CAGTCCCTAT GTGGCAGGAA
CATGAATTTA TCGGAGTGTC CACGGTAGAT GTCGCACTAT CGAGTCTAGA TAACTTTTTT
AACACCGCAA TATCGAGCCA AGGAGGCTAT GTATTCGCGC TTGACCAACA AAACCGATTA
TTATCCTATC CAGATCTGGA CAATAACGGC ACTGTCGATA GGCAGGCGCT GTTTCAACCG
TTTGCCACAT TTGCCCAAAA GCATCCCTCT TTCAAGCCAC TTCAACAAAC CATCAAACAG
GTTGATACCG ATTTTATTCA ACGGGCTAAT CTCAATAAAG CCTATGAAGA GACACAACTC
GCAAATGTTA TTGAAAATGT CCCTGAGCAT GAACGCGCTA AGCTTGTGGC ATTGATAAAT
CAAAATGCTA ATAACAAACT CCAACAGGTA GAGCTTGTAG CAAGCCTTAA ACTTGATAGC
GATCCAAGAC TTAAGGAGCC CGTGATTGTC ACCGTATTCT TAATGCCGGG AACCTACTGG
AAGATTGTCT TAGTCACCCC CATCTCGAGT ATCGCCTATA ACAGCGAGTC ATTAGCAAGC
TCTGTTGGCA TCTACTTAGT TAGCATACAA ATATTTGCGC TTATACTCCT TTTCATCGTG
CAAAATAAAC TGTTTATCAC GCCGATTAGT CGTATGGTTC GTGCTTTAAA TGATTCAAAC
CCAGCCAAAA TTGAACTTGA AGCGACAACA CGCAATGACG AAATTGGTAT GCTCGCCAAG
GCCTTTAGTT CTCGGACTCG GCAGTTAGAA ATAGCCCTAG CTAGCTTAGA CGCCACTAAC
CTAGCATTAG AGCAACAATT AGATGTTCAA CAGCAGTCTA AAACTGAATT AGAAGAGAAA
AAAGAGCAGC TGAACTCAGT ACTAAACTCA GCGCACAACT TGATATTTAT CAAGAATAAA
AAAGGCGAAT TTACCTTAGT CAACGACCAG TTCTGCAGTG TGCTATCACT TAAGCGAGAG
AAGATACTAG GAGCTAAAGA CCACCTGATA ATGCCTAAAG ATATAGCCAA GGTAAATCAG
GAAAAAGATC AGATTGTATT CAATGAAAAG CTTGAATTAA GTTACGAGCA AAGCTTCCCG
CTCGATGGTA ATCAACATAT CTACCTTGTC ACTAAGTTTC CTATTTTCAA TGAGAAAAAA
GAGCTAACCT CTGTTGGTAC AATCGCATTT GATATCAGTG CTAGTAAAGA GGTTGAGCTT
AAGAAGCGAG CACAGTTTGA GATCCTTAGG CAGGAAACCT CAGACAATAT TCGTGTCATT
GAAAAACTAG AGCTGACGAA TAAACGACTA CAGAGTGAGA GTCAACAAGC CAAGTTTGAG
AATAACCGCC AAAACAACTT TGAGAGAGTA AAGCGTGAGA ATCAAACACT TTACCCTTCT
CTTGTCTCAG CTATTGTAAA ACCCATATTC AGAAAACAAG ACGATTTAGC AGCCAGTGCT
TACAGGCTTG CAAATGACGA AATCAATGTG ACTGACTTTA ACACCAAACT TGCCGATCAA
ACTGAGCGAC TAAGACATCT TGAGTACCTG TTCTCCGCAC AGGATTATAT AGCCAAACCT
ATCGACTTAG TCTCACTGCT TGAACATATT GTCGCGCTGT TACAACCCAA ATTAGCCACA
AGAAATATTG TTTTAGAAAT AGATAGCGAT AACAGGCTGA TTGTCGAAGG AGTCCATTGG
CATTTTCTAC TCATTTTCTA TCGAGCTATC AGTAATACCA TTACCGATGC TTTTTATCAG
CAAGGCAAGA CTCAAAATAT GAAGATCGGC TTAAGCAAAG CGAATCAGCA GATAGTGATG
ACAATATATG ATAATGGAAG AGGCTTCGAT GAGACTCAAT TAGCAGAGCT TCAAATGACA
CTTGATAAAG CAGAGGTAAA AGGAACCCTA TCGGCACTCT CTGTATGGTT AAAGAGTGAG
TTTAACGGGC AACTGAGTAT AACGCCCTTA CCAGCAAAAT CTGAATTTAA TACTTTGGTA
AGCTACAACT TATCTACGTA A
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| Protein sequence | MAKPNRQYSK LTDWRSNLPM QFMLVQLLVA AVIIITSVWF LKTIETERLI DNQEFLSINQ
GKTIVAKLQQ KTNKIENLAV SIGALGELYQ HSPQELKTAI PALLDQPGQQ EVILGGGVWP
EPFLFAPNNQ KDSFFWARNF ADELIAVNDY NAEGISPYYQ EDWYVPAKFY PTDTTYWSKS
YIDPFTQKAM LTASVPMWQE HEFIGVSTVD VALSSLDNFF NTAISSQGGY VFALDQQNRL
LSYPDLDNNG TVDRQALFQP FATFAQKHPS FKPLQQTIKQ VDTDFIQRAN LNKAYEETQL
ANVIENVPEH ERAKLVALIN QNANNKLQQV ELVASLKLDS DPRLKEPVIV TVFLMPGTYW
KIVLVTPISS IAYNSESLAS SVGIYLVSIQ IFALILLFIV QNKLFITPIS RMVRALNDSN
PAKIELEATT RNDEIGMLAK AFSSRTRQLE IALASLDATN LALEQQLDVQ QQSKTELEEK
KEQLNSVLNS AHNLIFIKNK KGEFTLVNDQ FCSVLSLKRE KILGAKDHLI MPKDIAKVNQ
EKDQIVFNEK LELSYEQSFP LDGNQHIYLV TKFPIFNEKK ELTSVGTIAF DISASKEVEL
KKRAQFEILR QETSDNIRVI EKLELTNKRL QSESQQAKFE NNRQNNFERV KRENQTLYPS
LVSAIVKPIF RKQDDLAASA YRLANDEINV TDFNTKLADQ TERLRHLEYL FSAQDYIAKP
IDLVSLLEHI VALLQPKLAT RNIVLEIDSD NRLIVEGVHW HFLLIFYRAI SNTITDAFYQ
QGKTQNMKIG LSKANQQIVM TIYDNGRGFD ETQLAELQMT LDKAEVKGTL SALSVWLKSE
FNGQLSITPL PAKSEFNTLV SYNLST
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