| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_2022 |
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| Symbol | |
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| ID | 5662415 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 2447811 |
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| End bp | 2448866 |
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| Gene Length | 1056 bp |
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| Protein Length | 351 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 641236617 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001501877 |
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| Protein GI | 157961843 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.372668 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAATAA AATGGATACT CGAATATGGC GGGAGGAAAG CATCCTTTAT CTCTTTAGTA
AGAGCATGTT TGATGGTCGG TATATTGTCA GTTCTGTCTG CTTGTAGTTC TACGCCAGAA
GAGACACTAA CACCAGTAAA AGCGCCTGAG CGCCAAGATT TACTTGATGT TGGCGCTTTA
TCATCCGTAA GTGCGGACTT CTCTGCACCA GCTACTGAAG AAGAAGCGTT ACTAAAAGCT
CATAACGAAG AAAAGTCAGG CAATATTGAA AAAGCACTAT ATGCTTACAT TCAAGCACTG
GATTTCAACG CTAGAAATGC ACAAACCTTC TATCAAATAG GCCGTATACA TACCATGAGG
GGAAATCCTG AAATAGCTCT TAAGGCCTAT AATGAAGCGC TCGCTATTGA CCCTAATTTG
ATGATGGTTC ATGCAGATCT TGGGGTTATT AGCATGGATA AGCGCCAATA TAGAGACGCA
CGTTTACACT TAGAAAAGGC AATTGAGTTA GATCAACAAA GGTTAGCAGA GCTGGAAGTA
CAGCAGGTCA TGGGGTCTTT CTTAGTACCG AATAGAGAGT CACCGGCGAG AGTGTATAAC
GCCATTGCGA TTCTGGAAGA TGTAGAAAAT AATCATCGAC AGGCTAGAGA ATATTTCAAA
TTGATTCTAG AGCTTCAGCC TCACTCGGCG GTATTGATTA CCAATCTTGG TTATTCTTAC
TATTTAACGG GTGAATTAAC CATGGCAGAA AAATATTTAA GGCAAGCTCT TAGAGAAGAC
TCTCGCTTTG ACAGAGCTTG GACAAACTTA GGTCTTGTCT ATGTCCGTAA AGGTATTTAC
AAGCGTGCGC TTTCCGCTTT TGAACAGACT ATGTCTCCTG CTGATGCGTT AAATGATTTG
GGTTACTTTT TGATGCTTGA GGGCAAGTAT GAACGAGCGA TTGCTTTATT TGAACGAGCA
ATTGACATGT CTCCTAGTTA TTTTGATCAG GCTCAGAAAA ACTTAAGAAG GGCTAGGGCC
GAGATCTCGG ATGAGTTTCA GCATGCGGGC TATTGA
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| Protein sequence | MTIKWILEYG GRKASFISLV RACLMVGILS VLSACSSTPE ETLTPVKAPE RQDLLDVGAL
SSVSADFSAP ATEEEALLKA HNEEKSGNIE KALYAYIQAL DFNARNAQTF YQIGRIHTMR
GNPEIALKAY NEALAIDPNL MMVHADLGVI SMDKRQYRDA RLHLEKAIEL DQQRLAELEV
QQVMGSFLVP NRESPARVYN AIAILEDVEN NHRQAREYFK LILELQPHSA VLITNLGYSY
YLTGELTMAE KYLRQALRED SRFDRAWTNL GLVYVRKGIY KRALSAFEQT MSPADALNDL
GYFLMLEGKY ERAIALFERA IDMSPSYFDQ AQKNLRRARA EISDEFQHAG Y
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