| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_1499 |
|---|
| Symbol | |
|---|
| ID | 5661896 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | + |
|---|
| Start bp | 1819107 |
|---|
| End bp | 1821791 |
|---|
| Gene Length | 2685 bp |
|---|
| Protein Length | 894 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 641236087 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_001501359 |
|---|
| Protein GI | 157961325 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
|---|
| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTCAG TAACCTTAAC CGCAAAAGCA GTACGTCGTA GCTTTATAGC CGCTGCAGCG
ACAAGTGTTG CTTTATCTGG ATTTGCATTT GCAGAAGAAG CTGCAGATGA AAAAGTAGAA
CGTATCGAAG TAACCGGTTC GCGTATTAAG CAAGTCGATA TGGAAACTGT TTCTCCTGTT
ACAGTTATCA GTGCTGCTGA TATCGCTATG ACAGGTGAGA AAACAGTTGC AGATGTTTTA
AACAACTCTG CAGTAAATAG CTTTGGTTCT TGGCGTGGCA TGTCTGGCTA CGGCTCAGGC
GGTAGCGCAA CAAGTAGTGT TAACCTGCGT GGTCTAGGTT CTTCTGCAAC ACTTGTTTTG
CTAGACGGCC GTCGTATGCC GGGTACTAGC TCAAGTTCTG GAGCGGTAGC CGATACATCT
CAGATCCCAA TGGCGATTGT TGAACGTATT GAAATTCTAC GTGATGGTGC ATCGGCTGTT
TATGGTTCTG ATGCTGTTGC TGGTGTAATT AACATTATCA CTAAGAAAGA TTTCGATGGT
GTTCAATTAG ATTTTAGTAC TGAGCAGCCA AGTATTGAAG GCGGTGATGC TAACCGTTTC
TCATTAGCGA CGGGTTTTAA CACCGACAAA GGTAACATCA CTTTTACTTA TGAGTATTAT
GATACTAAGA ACGTGATGGA CCGTGATGTT TGGGACATGA ATGACCCAAC TTACAGCGAT
TATAGCTCTT TCAGCTCAGT ACCTAACGGT TATTACAACA CTGGCGAGAA GAATGATGAT
GGTAAAGACA TCTATGCATT CTATTCAAAC TCAGATATGT GTGAGCAGAC TGAAAACGTA
TCTAACGGTA CCGATGGTGA GAATAACGGT CGTTGTTACT ACAGCTATGG TGAAGTGACT
AAGTTATTTG GTGATGTGAC TCGTAACTCA TTTATGACTA ATTTTAGTTA CGAAGTTGCA
GAAGATATTC AGTTCCGTGG TCGTGGTTCT GCATCATTTA CTGAAACCCA TACCCGTTAT
GCTGGTACGC CTGTATCGAC AAACTACCCT GTGATGGACG CAGAAAACCA GTATAACCCT
ACTGGTGAAG ATATGACTAT CTACATGCGC TCAGTACAGA TTGGTGAGCG TGACACACTG
ACTGAAACAA ATAACTTCGA TATCTTAGGC GGACTCGTTG GATTCAGTGA TGTTGCTAAT
GGTGTTGATT GGGAAGTAAA CCTACAGCAT TCAGCTTCTA CCACTAATTC ATTTAACTAT
AATCTTATCA ATGACAATAT CATCCAGAGT GAAATTGACA CAGGTGAGTA CGACATCTTT
AACACTCAAG GCTTAGCTTA TGATGAGTGG GAACAGCAGA TGGGAGCGCT ATATGGCGCC
GCTGCTCACA CAGGTGTTTA CCAGGGTAAA TTTGAAAGTA CACAAATTGA CGCACTTGCT
TCAACATTAA TTTTCGAAAA TGATGCAGTA TCACTAGCTA TGGTTGGTGG TGTTGAATAT
GAAATGATTA GCTTTGAGCA AACCAGTGAT CCAGAGTCTG CTGCGGGTAT AATCTCAGGT
GGTTCAGGTG GTGATGATGT TGATGCAACA CGTGACCGTA CAGCAGGTTA TGTAGAATTC
CAGATGGGGC TGCCTGCCAA TGTTGAGCTT TCAGCAGCTG TTCGTTATGA ACGTTATGAG
CAAGAAGGTA ACCTAACTGG TGCAACTGGT GAAGTGACTG AGTCATCTAC ATTTGATGCA
GTAGTTCCTA AGTTTGGTTT GAGCTGGCGC CCAGTAGATT CACTATTACT ACGTGCGAGC
TACGGTGATT CATTCCGCGC ACCAAACATG GGCGAGATGT TCTCTTCACA GTCACTAAGT
TTCGAAAGCG GCTATGATCC AGTTTGGTGT GGTGCCAACG GCGACGATGC TGACGCAGAT
TACTGTTCAC CAACCAACCA ATATAAAACT TGGTACGGTG GTAACCCAGA TCTAGAAGCT
GAAGAAGGTA ACTCGTTAAC ACTTGGTGGT GTGTGGAACG TAACTGATGA GTGGAACATT
GAGCTTTCTT ACTATTCAAT CGTTTATGAT AATAAGATTG AATCAGTCGG TATTGATGAT
CTTTTATATG ATGAGCAGAT CAATGGTGGT TCAGATAAGA TTCATCGTGG AGCAGACGGT
AAGATTGAGT ACATTGAAGC GGGTGTAGAA AACATCGCCT CAGTTGAAAC ATCAGGTCTA
GATTTTGTGA CAGCCTATAA CCTAGAGACA GGTTTTGGTG ACTTCAACTT CAAGCTAGAT
GTGTCACATG TAATGGCATT CGATAAGCAA GCCGATGCAA CATCAGAAAT GGTTGAGTAT
GCAGGTACTC AGGATTACCC AGATTGGCGT GGTAACTTCG CTGCTAGTTG GTACTTAAAC
GACTTCAGCG CTGCTTGGAC AACTGTTTAT ATCGGTAGTC AGTCAGGTCA AGATCTTCGT
GATGAAGGCT ATGACTACAT CGTTGACATA CCTAGTTACA TGAAGCACAA CTTCCAGGTG
GGTTACACCC ATGATTGGAA CGGCAGCATC ACAGTTGGTG TGAACAATAT CTTTGATGAA
GAAGCGCCAA GCATGTATGA CTTCGCGGGT TACCGTGACA CAAATACGGG TTTATATGAT
GTCTTAGGAC GCACTTATTA CCTAAGATTG AACCAGAAGT TCTAA
|
|---|
| Protein sequence | MSSVTLTAKA VRRSFIAAAA TSVALSGFAF AEEAADEKVE RIEVTGSRIK QVDMETVSPV
TVISAADIAM TGEKTVADVL NNSAVNSFGS WRGMSGYGSG GSATSSVNLR GLGSSATLVL
LDGRRMPGTS SSSGAVADTS QIPMAIVERI EILRDGASAV YGSDAVAGVI NIITKKDFDG
VQLDFSTEQP SIEGGDANRF SLATGFNTDK GNITFTYEYY DTKNVMDRDV WDMNDPTYSD
YSSFSSVPNG YYNTGEKNDD GKDIYAFYSN SDMCEQTENV SNGTDGENNG RCYYSYGEVT
KLFGDVTRNS FMTNFSYEVA EDIQFRGRGS ASFTETHTRY AGTPVSTNYP VMDAENQYNP
TGEDMTIYMR SVQIGERDTL TETNNFDILG GLVGFSDVAN GVDWEVNLQH SASTTNSFNY
NLINDNIIQS EIDTGEYDIF NTQGLAYDEW EQQMGALYGA AAHTGVYQGK FESTQIDALA
STLIFENDAV SLAMVGGVEY EMISFEQTSD PESAAGIISG GSGGDDVDAT RDRTAGYVEF
QMGLPANVEL SAAVRYERYE QEGNLTGATG EVTESSTFDA VVPKFGLSWR PVDSLLLRAS
YGDSFRAPNM GEMFSSQSLS FESGYDPVWC GANGDDADAD YCSPTNQYKT WYGGNPDLEA
EEGNSLTLGG VWNVTDEWNI ELSYYSIVYD NKIESVGIDD LLYDEQINGG SDKIHRGADG
KIEYIEAGVE NIASVETSGL DFVTAYNLET GFGDFNFKLD VSHVMAFDKQ ADATSEMVEY
AGTQDYPDWR GNFAASWYLN DFSAAWTTVY IGSQSGQDLR DEGYDYIVDI PSYMKHNFQV
GYTHDWNGSI TVGVNNIFDE EAPSMYDFAG YRDTNTGLYD VLGRTYYLRL NQKF
|
|---|
| |