Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Spea_0404 |
Symbol | |
ID | 5660804 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella pealeana ATCC 700345 |
Kingdom | Bacteria |
Replicon accession | NC_009901 |
Strand | + |
Start bp | 489235 |
End bp | 491925 |
Gene Length | 2691 bp |
Protein Length | 896 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 641234938 |
Product | TonB-dependent receptor |
Protein accession | YP_001500267 |
Protein GI | 157960233 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0380405 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGTTTA ATAAAGTTGC TAAATTTATT AGCTTGGCGT GTGGTGGTGT AATGGCCCTC TCTGCGCCAG TCTATGCCGC GGAAACAGAG GAAGATAGTG TAGAGCGTAT TGAGGTTACC GGTTCGCGTC TAAAGCGTGT TGATATGGAA GGTGCAACAC CTGTAACAAC GATTACTGCT GAAGATATGG CTGTCGCTGG TTTCTCTACA GTAGGTGATG CGTTACGTTC ATCGACATTG AACTCATTCG GTTCATATGG TGGCACGGCA AACAATAGCT GGTCTTCACA AGCAACAATT CAGCTTAAAG GCGCAAGTGC GAGTGACACC TTAGTTTTGC TAGACGGTCA GCGTATGGCT AAATCACCTG TTCTTGGTGG TGCTGCAGCA AACATTAATA CAATCCCAAC GTCAGCTATT GAGCGTATCG AAATTCTATC TGATGGGGCA TCAGCTATTT ATGGTACTGA TGCGGTAGCG GGTGTTGTAA ACGTTATTTT GAAGAAAAGC TTCGAAGGTA TCGAATTTAA AGCGCGTGCA GAAGAAACTG AAGCTGAAGG CGGTGATAAC CACTCTTTCT CATTCACCGG TGGTTTAAAT TCAGAAAATG GTAATCTTGT ATTTACCATG GAGCACTACA AGAAAGATAA AATCTTGATG AGTGATCGCC CCTACACAGC TGCGCACGTG AGAGATGGCG AAGATCCAAC TGATTTCCGT AGCTGGGTAG GCTTAAGTCA GACTGGTCGT ACATTAGATA TGGGACCAAA TGGTGGTTGG GCATATCAAG CACCTTTTTC TAATACTGAT CGTACATGTG CTGATGTTTA TGGAGATAAC TTCATAGGAC CATTGTCTGA CAGCAAGTAT GCTGGTGAGA CAGCATGTGC ATACAACTAT ACCAATGCTG CTGCACTCGA TGTTGATCGT GAAAGAACCA ACACCTTGAT CAACTATGGC TACGATATTA CTGACGATAT TAAGCTTACT GCTCGTGCTT ACTGGGCTGC AAATAAAACC ATTGACCAAT CAGCACCCGT GCCTGGTTAT ATCTATTTTC CAGATGCAAT GCCAGCTTAT ACAACAGCTG AAGGTTTAGA TTTAGTTGCA ACACCAGAAG ATGCACGCAT GCTATATCGT TATGATACAG CGGGTAACCG TGTGCGCGAA AACCATGACA ACATGTATGA CATTTTGATT GGTTTAGAAG GCACTACCGA ATACGTAGAT TGGGATTTTG CGGCAACTTA TAACCGCTAC GATAACTTCG TATGGGGTAC CGGTTACGAA TTAAAAGGAG CGTCAACAGA TCTAGTCGGA GCATGGGATG ATGCGACCAA TTCGTTTGTC GGTTGGGATC CGCGTGATCC AAATTCTGTA GCGCCAAGTG GCGGTATGGC TAACTTCGAT ATGCGTCAAA CAGCCTCTTA TGCTGAGTTG AGTGGTGGTG CTGGTTTTGA TCTGTTTGAA CTGGATTCTG GTACTGCAGC AATGTACGTT GGTGCATCAT ACCGTGAAGA GTCGTTAGAC TCTAAAGTAG ATGCATTATC TGAAGCCGGT TTGATAAAAG GTGCAAGTGG TGGTTCTGGT GGTGAAGGCG AACGTGATAT TAAAGCAATT TTTGCTGAGA TGACCATTCC TCTACTTGAT AACCTAGAGC TAAACTTAGC TGCACGTTAC GATGATTACT CTGACTTTGG TGATACGTTT AACCCTCAGG TTTCTATCCG ATATAACCTG TTTGAACCAT TATTGCTTCG TGCATCTTGG GGAACTGGTT TTAAAGCACC AAGCTTATCG CAGTTAAACC AGACACCAAG TGAAGGTTGG AACGACATAA CGAACTATAT GCAATGTTAT GAGGAAACGG GTGTTGTTGA TGGTTGTACG ATTGAAAATA GCATTCCAGT TTATGTTGAT AAGAATGAAA ACTTAGGTCC TGAAGAGTCT GAAAGCTATA ACCTAGGTAT GGTTTGGGAT ATCACAGATA ACATCAACAT GACTGTTGAC TACTGGGTGC TTGATACTGA CAACCTAATA GGTCAGATTG GCAATGATGA GCTAGTCTAT ACGCAAGCTA AACTCTGGGA AGCGGCCGAC GCAATGGGCG TTGCACGTCC AGATATTTCA GTGGTTTACC CAGGGACTAG CATCTCTCAG AACAGTTCAG GTAAGCTAAC AGAGATGGAC AATGTGCTGC AAAACTTTGG TACTGCTGAG CGTGAAGGTA TTGATACCAA TATTGCTGCA ACATTCGAAA CTGGAGTGGG AGAGTTTAAA CTTGGTCTCG CTTGGTCTCA CTATATTAAG TATACCGATA GTGCGCCAAT CGGTGGTGAA CTAGTGGTAT CTCGTAACTG GGCGGGTTCA TCAGGAACAC CTGATGATCG TGTAAGCTTT AGCACTAATT ACATTTTTGC CGATGACCAT AGCTTGTTCT ATAAAGCTGA TTACATTGAT GGTCAAACAA CGTATGACAT CAATGATGAT GGTTCAAAGT ATGAGATAGA TTCATTGATA TATCATACTA TTACATACTC ATACATGATG CCTTGGAACA ACTCTATCAG TATCGGTGTA AACAACCTAA CTGATGAAGA GCCTGCATTT GAGCAAAATG GTGATTACAG TTCGAGCTTA TATGACATTA TGGGTCGCAG CTACTGGGTT TCATTCTCTC AAAGTTTCTA A
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Protein sequence | MKFNKVAKFI SLACGGVMAL SAPVYAAETE EDSVERIEVT GSRLKRVDME GATPVTTITA EDMAVAGFST VGDALRSSTL NSFGSYGGTA NNSWSSQATI QLKGASASDT LVLLDGQRMA KSPVLGGAAA NINTIPTSAI ERIEILSDGA SAIYGTDAVA GVVNVILKKS FEGIEFKARA EETEAEGGDN HSFSFTGGLN SENGNLVFTM EHYKKDKILM SDRPYTAAHV RDGEDPTDFR SWVGLSQTGR TLDMGPNGGW AYQAPFSNTD RTCADVYGDN FIGPLSDSKY AGETACAYNY TNAAALDVDR ERTNTLINYG YDITDDIKLT ARAYWAANKT IDQSAPVPGY IYFPDAMPAY TTAEGLDLVA TPEDARMLYR YDTAGNRVRE NHDNMYDILI GLEGTTEYVD WDFAATYNRY DNFVWGTGYE LKGASTDLVG AWDDATNSFV GWDPRDPNSV APSGGMANFD MRQTASYAEL SGGAGFDLFE LDSGTAAMYV GASYREESLD SKVDALSEAG LIKGASGGSG GEGERDIKAI FAEMTIPLLD NLELNLAARY DDYSDFGDTF NPQVSIRYNL FEPLLLRASW GTGFKAPSLS QLNQTPSEGW NDITNYMQCY EETGVVDGCT IENSIPVYVD KNENLGPEES ESYNLGMVWD ITDNINMTVD YWVLDTDNLI GQIGNDELVY TQAKLWEAAD AMGVARPDIS VVYPGTSISQ NSSGKLTEMD NVLQNFGTAE REGIDTNIAA TFETGVGEFK LGLAWSHYIK YTDSAPIGGE LVVSRNWAGS SGTPDDRVSF STNYIFADDH SLFYKADYID GQTTYDINDD GSKYEIDSLI YHTITYSYMM PWNNSISIGV NNLTDEEPAF EQNGDYSSSL YDIMGRSYWV SFSQSF
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